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[179959_at]

Description C18B2.3 /REP_DB=WormBase Gene ID /WP=CE27077 /TR=Q18074 /GB=AAK39177.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 23      6grp_total > 13      4grp_total > 58      6grp_high1_sub > 02      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4652
1 2 3 4 range
A 2618.4
(0.1)
P 		3729.3
(1.5)
P 		4847.6
(3)
P 		275
(-3)
A 		4573
B 1623.1
(-1.2)
P 		4839.6
(3)
P 		4382.7
(2.4)
P 		195.8
(-3)
A 		4644
C 1931.8
(-0.4)
P 		4009.3
(2.9)
P 		4062.6
(3)
P 		317.3
(-3)
A 		3745
avr 2057.8
(-0.4) 		4192.7
(2.7) 		4431
(3) 		262.7
(-3) 		4168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4847
1 2 3 4 5 6 range
A 5804.7
(3)
P 		3903.8
(0.3)
P 		4362.8
(1)
P 		3527.6
(-0.2)
P 		3671.7
(0)
P 		1516
(-3)
A 		4289
B 5151.8
(2.7)
P 		5379
(3)
P 		3280.9
(-0)
P 		3412
(0.2)
P 		3559.9
(0.4)
P 		1219.3
(-3)
P 		4160
C 4084.8
(1)
P 		5644.2
(3)
P 		3984.8
(0.9)
P 		4360.8
(1.4)
P 		2140.9
(-1.5)
P 		958.1
(-3)
P 		4686
avr 5013.8
(3) 		4975.7
(2.9) 		3876.2
(1.2) 		3766.8
(1) 		3124.2
(0) 		1231.1
(-3) 		3783
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1376
1 2 3 4 range
A 953.4
(1.5)
P 		809.5
(0.8)
P 		1267.3
(3)
P 		40.3
(-3)
A 		1227
B 517.6
(-0.5)
P 		1195.3
(3)
P 		1015.6
(2.1)
P 		41.7
(-3)
A 		1154
C 639.5
(-0.4)
P 		1152.7
(1.8)
P 		1415.9
(3)
P 		53.5
(-3)
A 		1362
avr 703.5
(0.3) 		1052.5
(2.1) 		1232.9
(3) 		45.2
(-3) 		1188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1472
1 2 3 4 5 6 range
A 1070
(1.1)
P 		1388.4
(3)
P 		950.1
(0.4)
P 		894.7
(0.1)
P 		1108
(1.3)
P 		369.1
(-3)
A 		1019
B 1792.6
(3)
P 		1790.4
(3)
P 		796.7
(-1.5)
P 		903.7
(-1)
P 		1446.3
(1.4)
P 		454.7
(-3)
P 		1338
C 1514.1
(2.1)
P 		1722.2
(3)
P 		1014.2
(-0)
P 		877
(-0.6)
P 		692.8
(-1.4)
P 		320.7
(-3)
P 		1402
avr 1458.9
(2.2) 		1633.7
(3) 		920.3
(-0.4) 		891.8
(-0.6) 		1082.4
(0.4) 		381.5
(-3) 		1252
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179959_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18324
Sequence Type Exemplar sequence
Representative Public ID C18B2.3 NCBI
Target Description C18B2.3 /REP_DB=WormBase Gene ID /WP=CE27077 /TR=Q18074 /GB=AAK39177.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076218
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C18B2.3 ENSEMBL cdna:known chromosome:CEL140:X:3601820:3604134:1 gene:C18B2.3 None
GENEFINDER00000016055 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3601827:3604074:1 None
SNAP00000016047 ENSEMBL cdna:SNAP chromosome:CEL140:X:3602550:3604134:1 None
NM_076218 NCBI Caenorhabditis elegans C18B2.3 (C18B2.3) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3602734-3604135(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18B2.3
Entrez Gene 180651 Entrez gene
SwissProt Q18074 EMBL-EBI
WormBase CE27077 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39177 Hypothetical protein C18B2.3 [Caenorhabditis elegans] ref|NP_508619.1| C18B2.3 [Caenorhabditis elegans] 1.0E-125
blast AAK39177 Hypothetical protein C18B2.3 [Caenorhabditis elegans] ref|NP_508619.1| C18B2.3 [Caenorhabditis elegans] 1.0E-121
blast CAE68451 Hypothetical protein CBG14241 [Caenorhabditis briggsae] 1.0E-119
blast CAE68451 Hypothetical protein CBG14241 [Caenorhabditis briggsae] 1.0E-115
blast AAK39177 Hypothetical protein C18B2.3 [Caenorhabditis elegans] ref|NP_508619.1| C18B2.3 [Caenorhabditis elegans] 2.0E-86
blast CAE68451 Hypothetical protein CBG14241 [Caenorhabditis briggsae] 3.0E-82
blast T15549 hypothetical protein C18B2.3 - Caenorhabditis elegans 3.0E-66
blast T15549 hypothetical protein C18B2.3 - Caenorhabditis elegans 5.0E-66
Sequence
Target Sequence 
>C. ELEGANS:179959_AT
cttttctcactctatctgagccagctgctcattgctcgatttacacccacgcgagtttca
agagagagagagagacacactttcttagaaagcgatatcaagaactacgttctaataaaa
aaaaacaacttgttgaatttcagatacccatatgttcgatacagctatggaaacactgac
accggactcggcattttgactcaatcggaatcggtctacggccaccactctggaattcgt
gatattggaactaagcgttggctggagggaaagctcaatgcctataacacctctcttttc
acccgtcccgactaccaaaaacgtgttgagagaccactagcatcagcaagaagctacgtc
cgatatatgccagttgatgacgccttggatatgtacaagaagagatgtatgacagttgga
acgttgtcgaagtactggctttcaccagctacttgggcttcccgtcgcgagaaggagctc
aacctctcgtcatctctcagccgtggaaactactcttactctagccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTTCTCACTCTATCTGAGCCAGC 257 223 40 Antisense
AGCTGCTCATTGCTCGATTTACACC 122 81 62 Antisense
ATTTACACCCACGCGAGTTTCAAGA 380 15 78 Antisense
AAACACTGACACCGGACTCGGCATT 348 125 210 Antisense
GGACTCGGCATTTTGACTCAATCGG 272 523 223 Antisense
GGCCACCACTCTGGAATTCGTGATA 543 543 259 Antisense
AAAGCTCAATGCCTATAACACCTCT 112 125 309 Antisense
AGCTACGTCCGATATATGCCAGTTG 464 79 391 Antisense
AAGTACTGGCTTTCACCAGCTACTT 169 155 469 Antisense
GTCATCTCTCAGCCGTGGAAACTAC 239 467 528 Antisense
TGGAAACTACTCTTACTCTAGCCGA 608 547 543 Antisense
Sequence Source Affymetrix Proprietary Database