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[179958_at]

Description T05C1.5 /REP_DB=WormBase Gene ID /WP=CE02863 /TR=Q22220 /GB=AAA68392.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 22      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 35.9
(3)
A 		2.8
(-2.9)
A 		2.2
(-3)
A 		15.2
(-0.7)
A 		34
B 28.2
(3)
A 		21.6
(1.3)
A 		8.9
(-1.9)
A 		4.6
(-3)
A 		24
C 21.5
(-1.6)
A 		13.8
(-2.7)
A 		11.8
(-3)
A 		54.7
(3)
P 		43
avr 28.5
(3) 		12.7
(-1.5) 		7.6
(-3) 		24.8
(1.9) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 1.5
(-3)
A 		19.1
(0.8)
A 		28.5
(2.8)
A 		8.6
(-1.5)
A 		29.2
(3)
A 		20.9
(1.2)
A 		28
B 10.9
(-1.7)
A 		40.1
(3)
A 		3.2
(-3)
A 		5.7
(-2.5)
A 		2.9
(-3)
A 		7.8
(-2.2)
A 		37
C 2.5
(-3)
A 		36.2
(0.8)
A 		25
(-0.4)
A 		55.1
(3)
A 		15.1
(-1.6)
A 		16.6
(-1.4)
A 		53
avr 5
(-3) 		31.8
(3) 		18.9
(0.1) 		23.1
(1.1) 		15.7
(-0.6) 		15.1
(-0.7) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 13.1
(3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		2.2
(-2.2)
A 		13
B 9
(3)
A 		5.3
(0.2)
A 		2.1
(-2.2)
A 		1
(-3)
A 		8
C 7.1
(0.6)
A 		4
(-3)
A 		4.1
(-2.9)
A 		9.2
(3)
P 		5
avr 9.7
(3) 		3.3
(-2.2) 		2.3
(-3) 		4.1
(-1.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.3
(-3)
A 		6.8
(1.6)
A 		6.2
(1.2)
A 		2.2
(-1.7)
A 		8.8
(3)
A 		5.1
(0.4)
A 		9
B 3.8
(-1.6)
A 		13.3
(3)
A 		0.8
(-3)
A 		1.5
(-2.7)
A 		1.2
(-2.8)
A 		2.9
(-2)
A 		13
C 0.9
(-3)
A 		11
(2.9)
A 		6.4
(0.2)
A 		11.1
(3)
A 		4.9
(-0.6)
A 		5.5
(-0.3)
A 		10
avr 1.7
(-3) 		10.4
(3) 		4.5
(-1.1) 		4.9
(-0.8) 		5
(-0.7) 		4.5
(-1.1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179958_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4625
Sequence Type Exemplar sequence
Representative Public ID T05C1.5 NCBI
Target Description T05C1.5 /REP_DB=WormBase Gene ID /WP=CE02863 /TR=Q22220 /GB=AAA68392.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062393(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062393 NCBI Caenorhabditis elegans T05C1.5 (T05C1.5) mRNA, complete cds. 11/11 None
T05C1.5 ENSEMBL cdna:known chromosome:CEL140:II:4490396:4490853:-1 gene:T05C1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4490394-4490852(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05C1.5
Entrez Gene 188115 Entrez gene
SwissProt Q22220 EMBL-EBI
WormBase CE02863 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68392 Hypothetical protein T05C1.5 [Caenorhabditis elegans] ref|NP_494794.1| T05C1.5 [Caenorhabditis elegans] 2.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 3.9E-12
Sequence
Target Sequence 
>C. ELEGANS:179958_AT
atgagtcagaagctttgctgcatttatttcagagatatgcttcagtttttgccttttttc
atgctcagctctgttataattagtgcacaggaactgaaaacctgtagaactgtatcttat
ggagttgatcaggtgataacttccccggacctttgtgaagataaattctccggttgtgct
gttcgtaaaccgtattgtaagactagatcacgtaattttgaagcagcaatgaatagtttt
tgtgcgaagacttgtggtcgctgcaaagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGTCAGAAGCTTTGCTGCATTT 550 45 13 Antisense
GAAGCTTTGCTGCATTTATTTCAGA 692 341 21 Antisense
GAGATATGCTTCAGTTTTTGCCTTT 174 397 44 Antisense
CCTTTTTTCATGCTCAGCTCTGTTA 10 269 64 Antisense
GCTCAGCTCTGTTATAATTAGTGCA 508 301 75 Antisense
AAACCTGTAGAACTGTATCTTATGG 677 125 110 Antisense
TTGATCAGGTGATAACTTCCCCGGA 397 703 137 Antisense
AGATAAATTCTCCGGTTGTGCTGTT 97 67 171 Antisense
GTTGTGCTGTTCGTAAACCGTATTG 230 437 185 Antisense
GAATAGTTTTTGTGCGAAGACTTGT 681 323 243 Antisense
GAAGACTTGTGGTCGCTGCAAAGCT 345 339 258 Antisense
Sequence Source Affymetrix Proprietary Database