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[179957_at]

Description C01F4.1 /REP_DB=WormBase Gene ID /WP=CE07797 /TR=O01445 /GB=AAB52433.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 09      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 2.3
(-3)
A 		26.8
(0.3)
A 		14.4
(-1.4)
A 		46.7
(3)
A 		44
B 23.3
(3)
A 		3.8
(-2.9)
A 		18.7
(1.6)
A 		3.6
(-3)
A 		20
C 1.1
(-3)
A 		0.8
(-3)
A 		1.7
(-2.9)
A 		49.9
(3)
A 		49
avr 8.9
(-3) 		10.5
(-2.6) 		11.6
(-2.3) 		33.4
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 0.8
(-3)
A 		2.5
(-2.7)
A 		32.9
(3)
A 		9.8
(-1.3)
A 		0.8
(-3)
A 		1.4
(-2.9)
A 		32
B 11.4
(0.1)
A 		4.4
(-2)
A 		0.9
(-3)
A 		21.2
(3)
A 		2.2
(-2.6)
A 		2.4
(-2.6)
A 		20
C 1.8
(-2.8)
A 		7.6
(-2)
A 		17
(-0.6)
A 		41.4
(3)
A 		0.6
(-3)
A 		1.9
(-2.8)
A 		41
avr 4.7
(-2.1) 		4.8
(-2.1) 		16.9
(1.1) 		24.1
(3) 		1.2
(-3) 		1.9
(-2.8) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.9
(-3)
A 		5.8
(2)
A 		3.8
(-0.1)
A 		6.8
(3)
A 		6
B 7.4
(3)
A 		0.9
(-2.9)
A 		4.3
(0.2)
A 		0.8
(-3)
A 		7
C 0.4
(-2.9)
A 		0.2
(-3)
A 		0.6
(-2.7)
A 		8.4
(3)
A 		8
avr 2.9
(-1.8) 		2.3
(-3) 		2.9
(-1.8) 		5.3
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.1
(-3)
A 		0.9
(-2.3)
A 		7.2
(3)
A 		2.5
(-1)
A 		0.2
(-2.9)
A 		0.3
(-2.8)
A 		7
B 4
(1.2)
A 		1.5
(-1.6)
A 		0.2
(-3)
A 		5.6
(3)
A 		0.9
(-2.2)
A 		0.9
(-2.2)
A 		5
C 0.7
(-2.6)
A 		2.3
(-1.4)
A 		4.3
(0)
A 		8.3
(3)
A 		0.2
(-3)
A 		0.6
(-2.7)
A 		8
avr 1.6
(-1.6) 		1.6
(-1.6) 		3.9
(1.1) 		5.5
(3) 		0.4
(-3) 		0.6
(-2.8) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179957_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1668
Sequence Type Exemplar sequence
Representative Public ID C01F4.1 NCBI
Target Description C01F4.1 /REP_DB=WormBase Gene ID /WP=CE07797 /TR=O01445 /GB=AAB52433.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059067(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059067 NCBI Caenorhabditis elegans C01F4.1 (C01F4.1) mRNA, complete cds. 11/11 None
C01F4.1 ENSEMBL cdna:known chromosome:CEL140:I:4866190:4868169:1 gene:C01F4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4866189-4868169(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01F4.1
Entrez Gene 182070 Entrez gene
SwissProt O01445 EMBL-EBI
WormBase CE07797 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52433 Hypothetical protein C01F4.1 [Caenorhabditis elegans] ref|NP_491468.1| C01F4.1 [Caenorhabditis elegans] 5.0E-52
Sequence
Target Sequence 
>C. ELEGANS:179957_AT
gaaaaacccaggaacacacatactcccaaaaaatccagaatgctcaaaacaaaagactct
cacaaaacaattactactgctcgaattgttcgaatttcagcttgatgcacaaattcaaca
aaataccttccaattagaattaacaatacaaagaagaaaagaacacttagaaattgatag
tgtgatgaaaattaaaaatcgaaatttcgcaaattttggaatgtttaattcgcttcatat
tatcagattttggaatttattctataatcgtatatcggcagctgattttccagaaaattc
aggatttagaatgtttgccacagaaattcttgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAAACCCAGGAACACACATACTC 656 353 15 Antisense
AACACACATACTCCCAAAAAATCCA 185 135 27 Antisense
ATGCTCAAAACAAAAGACTCTCACA 412 43 54 Antisense
CTCACAAAACAATTACTACTGCTCG 534 227 73 Antisense
AATTACTACTGCTCGAATTGTTCGA 168 175 83 Antisense
TGTTCGAATTTCAGCTTGATGCACA 410 561 101 Antisense
ATTCAACAAAATACCTTCCAATTAG 479 9 127 Antisense
GAATGTTTAATTCGCTTCATATTAT 373 331 233 Antisense
CGTATATCGGCAGCTGATTTTCCAG 464 245 283 Antisense
TTCAGGATTTAGAATGTTTGCCACA 542 685 312 Antisense
AATGTTTGCCACAGAAATTCTTGTA 583 163 324 Antisense
Sequence Source Affymetrix Proprietary Database