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[179956_at]

Description B0207.9 /REP_DB=WormBase Gene ID /WP=CE07687 /TR=O01432 /GB=AAB52454.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 05      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 32.1
(1.6)
A 		5.8
(-3)
A 		14.5
(-1.5)
A 		39.8
(3)
A 		34
B 22.3
(0.1)
A 		3.6
(-3)
A 		39.6
(3)
A 		10.9
(-1.8)
A 		36
C 17.7
(-1.5)
A 		25.9
(-0.8)
A 		2
(-3)
A 		66.2
(3)
P 		64
avr 24
(-0.3) 		11.8
(-3) 		18.7
(-1.5) 		39
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 54.9
(3)
A 		2.1
(-3)
A 		37.7
(1)
A 		29.7
(0.1)
A 		28.8
(0)
A 		37.2
(1)
A 		53
B 11.5
(-3)
A 		35.8
(0)
A 		20.7
(-1.9)
A 		44.6
(1.1)
A 		59.6
(3)
P 		41.8
(0.8)
P 		48
C 12.9
(-3)
A 		30.4
(0)
A 		19.6
(-1.8)
A 		31.4
(0.2)
A 		21.1
(-1.6)
P 		47.5
(3)
P 		35
avr 26.4
(-1.9) 		22.8
(-3) 		26
(-2) 		35.2
(0.8) 		36.5
(1.2) 		42.2
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.7
(3)
A 		1.3
(-3)
A 		3.8
(-1.6)
A 		5.8
(-0.4)
A 		10
B 7.1
(1.5)
A 		0.9
(-3)
A 		9.2
(3)
A 		2.3
(-2)
A 		8
C 5.9
(-0)
A 		7.5
(0.9)
A 		0.7
(-3)
A 		11.2
(3)
P 		11
avr 8.2
(3) 		3.2
(-3) 		4.6
(-1.3) 		6.4
(0.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 10.1
(3)
A 		0.7
(-3)
A 		8.2
(1.8)
A 		7.5
(1.3)
A 		8.7
(2.1)
A 		9.1
(2.4)
A 		9
B 4
(-3)
A 		11.9
(-0.7)
A 		5
(-2.7)
A 		11.8
(-0.7)
A 		24.2
(3)
P 		15.6
(0.4)
P 		20
C 4.8
(-3)
A 		9.3
(-0.6)
A 		5
(-2.9)
A 		6.3
(-2.2)
A 		6.8
(-1.9)
P 		15.9
(3)
P 		11
avr 6.3
(-2.8) 		7.3
(-2) 		6.1
(-3) 		8.5
(-1.1) 		13.2
(2.8) 		13.5
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179956_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1503
Sequence Type Exemplar sequence
Representative Public ID B0207.9 NCBI
Target Description B0207.9 /REP_DB=WormBase Gene ID /WP=CE07687 /TR=O01432 /GB=AAB52454.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059318(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059318 NCBI Caenorhabditis elegans B0207.9 (B0207.9) mRNA, complete cds. 11/11 None
SNAP00000009176 ENSEMBL cdna:SNAP chromosome:CEL140:I:5965618:5966492:-1 11/11 None
GENEFINDER00000009190 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5965618:5966492:-1 11/11 None
B0207.9 ENSEMBL cdna:known chromosome:CEL140:I:5965618:5966480:-1 gene:B0207.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5965617-5966480(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0207.9
Entrez Gene 181838 Entrez gene
SwissProt O01432 EMBL-EBI
WormBase CE07687 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52454 Hypothetical protein B0207.9 [Caenorhabditis elegans] ref|NP_491719.1| B0207.9 [Caenorhabditis elegans] 1.0E-39
blast CAE60428 Hypothetical protein CBG04035 [Caenorhabditis briggsae] 2.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491719.1 1 21-43
B0207.9 1 21-43
SNAP00000009176 1 25-47
GENEFINDER00000009190 1 25-47
Sequence
Target Sequence 
>C. ELEGANS:179956_AT
atggctaaggcatgcgatgcggatattattaatattaaggccgagagaatcagtaaagaa
ttggctattttgtatctgaccgctggttgtaatatccttcttctcattttgaatatcact
attctttttgcaattatcagttatatgaaaccagcgatttcggaaattcgaaagcagaca
ttcatcattatggattgtattcttctcacctacattccaaatggaattcgtgatattttg
gggtgtaaaccagaactgaagctcgagaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCTAAGGCATGCGATGCGGATA 163 51 13 Antisense
ATTGGCTATTTTGTATCTGACCGCT 405 3 72 Antisense
GACCGCTGGTTGTAATATCCTTCTT 693 381 90 Antisense
AATATCCTTCTTCTCATTTTGAATA 604 173 103 Antisense
ATATCACTATTCTTTTTGCAATTAT 157 21 125 Antisense
TGAAACCAGCGATTTCGGAAATTCG 435 571 158 Antisense
GAAAGCAGACATTCATCATTATGGA 709 357 182 Antisense
TTATGGATTGTATTCTTCTCACCTA 638 681 200 Antisense
TTCTTCTCACCTACATTCCAAATGG 451 689 212 Antisense
GGAATTCGTGATATTTTGGGGTGTA 401 533 235 Antisense
AAACCAGAACTGAAGCTCGAGAAAA 640 125 259 Antisense
Sequence Source Affymetrix Proprietary Database