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[179955_at]

Description F59D12.2 /REP_DB=WormBase Gene ID /WP=CE17951 /TR=O62281 /GB=CAB04540.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 80      6grp_total > 82      4grp_total > 50      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 67.3
(-2.8)
P 		173.3
(3)
P 		100.1
(-1)
P 		62.8
(-3)
A 		111
B 56.8
(-1.9)
A 		203.6
(3)
P 		170
(1.9)
P 		22.8
(-3)
A 		181
C 52.9
(-2.5)
M 		146.4
(2.2)
P 		162.3
(3)
P 		44
(-3)
A 		118
avr 59
(-2.3) 		174.4
(3) 		144.1
(1.6) 		43.2
(-3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 61
(-3)
A 		166.9
(3)
P 		101.8
(-0.7)
P 		127.1
(0.7)
P 		159.2
(2.6)
P 		104.1
(-0.6)
A 		106
B 86.3
(-2.6)
P 		192
(3)
P 		156.3
(1.1)
P 		176.8
(2.2)
P 		164.7
(1.6)
P 		78.9
(-3)
P 		113
C 114.2
(-1.8)
P 		227.2
(3)
P 		102.9
(-2.2)
P 		213.1
(2.4)
P 		85.3
(-3)
P 		84.7
(-3)
P 		143
avr 87.2
(-3) 		195.4
(3) 		120.3
(-1.2) 		172.3
(1.7) 		136.4
(-0.3) 		89.2
(-2.9) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 24.5
(0.2)
P 		37.6
(3)
P 		26.2
(0.6)
P 		9.2
(-3)
A 		28
B 18.1
(-1.3)
A 		50.3
(3)
P 		39.4
(1.6)
P 		4.9
(-3)
A 		45
C 17.5
(-1.8)
M 		42.1
(1.2)
P 		56.6
(3)
P 		7.4
(-3)
A 		49
avr 20
(-0.9) 		43.3
(3) 		40.7
(2.6) 		7.2
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 11.2
(-3)
A 		59.4
(3)
P 		22.2
(-1.6)
P 		32.2
(-0.4)
P 		48
(1.6)
P 		25.3
(-1.2)
A 		48
B 30
(-2.9)
P 		63.9
(2.5)
P 		38
(-1.6)
P 		46.8
(-0.2)
P 		66.9
(3)
P 		29.4
(-3)
P 		38
C 42.3
(-0.8)
P 		69.3
(3)
P 		26.2
(-3)
P 		42.9
(-0.7)
P 		27.6
(-2.8)
P 		28.3
(-2.7)
P 		43
avr 27.8
(-3) 		64.2
(3) 		28.8
(-2.8) 		40.6
(-0.9) 		47.5
(0.3) 		27.7
(-3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179955_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17690
Sequence Type Exemplar sequence
Representative Public ID F59D12.2 NCBI
Target Description F59D12.2 /REP_DB=WormBase Gene ID /WP=CE17951 /TR=O62281 /GB=CAB04540.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078180(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078180 NCBI Caenorhabditis elegans F59D12.2 (F59D12.2) mRNA, complete cds. 10/11 None
SNAP00000026820 ENSEMBL cdna:SNAP chromosome:CEL140:X:15672766:15675577:-1 10/11 None
GENEFINDER00000026824 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15673655:15675577:-1 11/11 None
F59D12.2 ENSEMBL cdna:known chromosome:CEL140:X:15672766:15675640:-1 gene:F59D12.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15673995-15675577(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59D12.2
Entrez Gene 181657 Entrez gene
SwissProt O62281 EMBL-EBI
WormBase CE35566 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04540 Hypothetical protein F59D12.2 [Caenorhabditis elegans] ref|NP_510581.2| F59D12.2 [Caenorhabditis elegans] 2.0E-47
blast CAE63351 Hypothetical protein CBG07755 [Caenorhabditis briggsae] 1.0E-30
blast CAB04540 Hypothetical protein F59D12.2 [Caenorhabditis elegans] ref|NP_510581.2| F59D12.2 [Caenorhabditis elegans] 4.0E-30
blast CAE63351 Hypothetical protein CBG07755 [Caenorhabditis briggsae] 2.0E-29
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510581.2 1 89-111
F59D12.2 1 89-111
SNAP00000026820 1 89-111
GENEFINDER00000026824 1 89-111
Sequence
Target Sequence 
>C. ELEGANS:179955_AT
ggagagcgtgaggtcaacctaccgcaactattctccgacgtttcacgaaccataagcggt
atttcgaacatcatgggtgctggagcagaagcatccggtgatgggccgggagttggtgga
agtagcagtgctggtggtggaggtggaccttcaatagctggtaatatttttggtaacaca
tgtttcaaggcctgtggtatggaagatattcaatttgctgcaagggctgcgggtgaaatg
ttttcaacaataaaaatgtgcgttcttatgtctacaatcatttcacttctcctcctggta
cttctttctactgctcttctttatttcatgtgctcttacaatcaggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGAGCGTGAGGTCAACCTACCGC 438 517 16 Antisense
TATTCTCCGACGTTTCACGAACCAT 670 663 44 Antisense
GCGGTATTTCGAACATCATGGGTGC 100 291 71 Antisense
GGGTGCTGGAGCAGAAGCATCCGGT 664 497 90 Antisense
GGTGATGGGCCGGGAGTTGGTGGAA 612 499 112 Antisense
GGAGGTGGACCTTCAATAGCTGGTA 409 515 154 Antisense
AATTTGCTGCAAGGGCTGCGGGTGA 196 175 227 Antisense
AAATGTGCGTTCTTATGTCTACAAT 695 119 269 Antisense
ATGTCTACAATCATTTCACTTCTCC 381 47 283 Antisense
TTTCTACTGCTCTTCTTTATTTCAT 70 673 320 Antisense
ATTTCATGTGCTCTTACAATCAGGT 403 15 338 Antisense
Sequence Source Affymetrix Proprietary Database