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[179954_at]

Description T06D4.2 /REP_DB=WormBase Gene ID /WP=CE13303 /TR=O16650 /GB=AAB66122.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 53.3
(-1.9)
A 		46.6
(-2.4)
A 		39.6
(-3)
A 		114.4
(3)
A 		75
B 75.2
(1.1)
A 		46.6
(-3)
A 		69.5
(0.3)
A 		88.2
(3)
A 		42
C 25.7
(-3)
A 		65.2
(1.2)
A 		39.8
(-1.5)
A 		82.5
(3)
A 		57
avr 51.4
(-2.8) 		52.8
(-2.6) 		49.6
(-3) 		95
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 54.5
(1.7)
A 		41.9
(-0.4)
A 		26.7
(-2.8)
A 		51.9
(1.2)
A 		25.4
(-3)
A 		62.9
(3)
A 		38
B 36
(-0.3)
A 		13.5
(-2.5)
A 		68.4
(3)
A 		8.9
(-3)
A 		57.5
(1.9)
A 		25
(-1.4)
A 		60
C 40.9
(0.6)
A 		44.7
(1)
A 		63.3
(3)
A 		46.3
(1.2)
A 		17.6
(-1.8)
A 		6.6
(-3)
A 		57
avr 43.8
(0.5) 		33.4
(-2.5) 		52.8
(3) 		35.7
(-1.8) 		33.5
(-2.4) 		31.5
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 19.4
(3)
A 		10.1
(-3)
A 		10.4
(-2.8)
A 		16.7
(1.3)
A 		9
B 24
(3)
A 		11.5
(-3)
A 		16.1
(-0.8)
A 		18.8
(0.5)
A 		13
C 8.5
(-3)
A 		18.7
(3)
A 		13.9
(0.2)
A 		13.9
(0.2)
A 		10
avr 17.3
(3) 		13.4
(-3) 		13.5
(-2.8) 		16.5
(1.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 10.1
(-0.3)
A 		14.9
(2.7)
A 		5.8
(-3)
A 		13.2
(1.7)
A 		7.7
(-1.8)
A 		15.3
(3)
A 		10
B 12.5
(-0.1)
A 		4.5
(-2.4)
A 		16.6
(1.1)
A 		2.4
(-3)
A 		23.4
(3)
A 		9.3
(-1)
A 		21
C 15.2
(2.6)
A 		13.6
(1.9)
A 		16.1
(3)
A 		9.3
(0.1)
A 		5.7
(-1.5)
A 		2.2
(-3)
A 		14
avr 12.6
(2.7) 		11
(0.6) 		12.8
(3) 		8.3
(-3) 		12.3
(2.3) 		8.9
(-2.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179954_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4602
Sequence Type Exemplar sequence
Representative Public ID T06D4.2 NCBI
Target Description T06D4.2 /REP_DB=WormBase Gene ID /WP=CE13303 /TR=O16650 /GB=AAB66122.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062127(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062127 NCBI Caenorhabditis elegans T06D4.2 (T06D4.2) mRNA, complete cds. 11/11 None
T06D4.2 ENSEMBL cdna:known chromosome:CEL140:II:3384057:3386106:-1 gene:T06D4.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039454 7/11 Cross Hyb Matching Probes None
SNAP00000039455 3/11 Cross Hyb Matching Probes None
GENEFINDER00000039461 7/11 Cross Hyb Matching Probes None
GENEFINDER00000039464 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3384055-3386105(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06D4.2
Entrez Gene 188174 Entrez gene
SwissProt O16650 EMBL-EBI
WormBase CE36890 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66122 Hypothetical protein T06D4.2 [Caenorhabditis elegans] ref|NP_494528.2| T06D4.2 [Caenorhabditis elegans] 1.0E-169
Sequence
Target Sequence 
>C. ELEGANS:179954_AT
gccaagacttgttgactgagcgcgccacgctgctcctggaaagctatgagatggaaaaga
aaatgagagctctggaaacttggggcaaacagatattccagacacaagcttcccgtcggg
ctcgctctgagcttatcaacatcaagctcagagatattgaggatcgcattgaggaaattg
aactggaactcatggggcatcgtacactgccaaaattttttttgcaggaagatgatgaag
acgacgacgtcgacgaagaagaagataacgaggttcagggcccaatggaagtccgtacac
tatggggcagactcgacagagcgacgagagagctccacaatcttaagagagagctcacac
aactgcattctgaaaatcgccgctatcaccatgcggaatcgtttttgagccctttggaga
acctattatcatttgtcgaacttcaaactttccagattttgattttcgttctcaatttgg
agcctcttgctttgctcggggagcttcgagtcccgcaagttggccaggatcgtttaaagt
cagcaatggtgaacatcagccgccaaatctcaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAAGACTTGTTGACTGAGCGCGC 95 279 572 Antisense
CCACGCTGCTCCTGGAAAGCTATGA 582 273 596 Antisense
GCTCGCTCTGAGCTTATCAACATCA 519 299 691 Antisense
GAACTCATGGGGCATCGTACACTGC 426 349 757 Antisense
GGTTCAGGGCCCAATGGAAGTCCGT 502 485 843 Antisense
GTACACTATGGGGCAGACTCGACAG 202 461 866 Antisense
GAGCTCACACAACTGCATTCTGAAA 7 389 922 Antisense
AAATCGCCGCTATCACCATGCGGAA 582 117 945 Antisense
CGTTCTCAATTTGGAGCCTCTTGCT 597 245 1038 Antisense
CCCGCAAGTTGGCCAGGATCGTTTA 652 257 1083 Antisense
GAACATCAGCCGCCAAATCTCAAAA 479 351 1122 Antisense
Sequence Source Affymetrix Proprietary Database