[Home] | [Total List]

[179953_at]

Description F47F6.4 /REP_DB=WormBase Gene ID /WP=CE10710 /TR=P91311 /GB=AAC71115.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 2.1
(-3)
A 		25.7
(-1.7)
A 		20.6
(-2)
A 		114.4
(3)
A 		112
B 40
(3)
A 		5.2
(-3)
A 		9.8
(-2.2)
A 		8.2
(-2.5)
A 		35
C 40.2
(1.8)
A 		6.7
(-3)
A 		9.2
(-2.6)
A 		49
(3)
A 		42
avr 27.4
(-1) 		12.5
(-3) 		13.2
(-2.9) 		57.2
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 2.5
(-3)
A 		14.1
(1.2)
A 		4.5
(-2.3)
A 		2.8
(-2.9)
A 		9.7
(-0.4)
A 		18.9
(3)
A 		16
B 7.8
(-1.8)
A 		29.5
(3)
A 		5
(-2.4)
A 		2.3
(-3)
A 		11.9
(-0.9)
A 		4.4
(-2.5)
A 		27
C 6.2
(-3)
A 		39.9
(3)
A 		32.5
(1.7)
A 		6.1
(-3)
A 		16
(-1.2)
A 		8
(-2.7)
A 		34
avr 5.5
(-2.6) 		27.8
(3) 		14
(-0.4) 		3.7
(-3) 		12.5
(-0.8) 		10.4
(-1.3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 0.8
(-3)
A 		5.6
(-1.2)
A 		5.4
(-1.3)
A 		16.8
(3)
A 		16
B 12.7
(3)
A 		1.3
(-3)
A 		2.3
(-2.5)
A 		1.7
(-2.8)
A 		11
C 13.3
(3)
A 		1.9
(-3)
A 		3.2
(-2.3)
A 		8.3
(0.4)
A 		11
avr 8.9
(3) 		2.9
(-3) 		3.6
(-2.3) 		8.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.5
(-3)
A 		5
(3)
A 		1
(-2.3)
A 		0.7
(-2.7)
A 		2.9
(0.2)
A 		4.6
(2.5)
A 		5
B 2.7
(-1.6)
A 		9.8
(3)
A 		1.2
(-2.6)
A 		0.6
(-3)
A 		4.8
(-0.3)
A 		1.6
(-2.3)
A 		9
C 2.3
(-2.4)
A 		12.2
(3)
A 		8.3
(0.9)
A 		1.2
(-3)
A 		5.2
(-0.8)
A 		2.7
(-2.2)
A 		11
avr 1.8
(-2.3) 		9
(3) 		3.5
(-1) 		0.8
(-3) 		4.3
(-0.4) 		3
(-1.4) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179953_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4588
Sequence Type Exemplar sequence
Representative Public ID F47F6.4 NCBI
Target Description F47F6.4 /REP_DB=WormBase Gene ID /WP=CE10710 /TR=P91311 /GB=AAC71115.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061533(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061533 NCBI Caenorhabditis elegans F47F6.4 (F47F6.4) mRNA, complete cds. 11/11 None
SNAP00000004731 ENSEMBL cdna:SNAP chromosome:CEL140:II:1262136:1263004:1 10/11 None
GENEFINDER00000004737 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1255598:1263004:1 11/11 None
F47F6.4 ENSEMBL cdna:known chromosome:CEL140:II:1262136:1263004:1 gene:F47F6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1262134-1263003(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47F6.4
Entrez Gene 185943 Entrez gene
SwissProt P91311 EMBL-EBI
WormBase CE10710 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast C88040 protein F47F6.5 [imported] - Caenorhabditis elegans 0.0
blast AAT48616 Hypothetical protein F47F6.5 [Caenorhabditis elegans] ref|NP_493933.2| F47F6.5 [Caenorhabditis elegans] 0.0
blast AAT48617 Hypothetical protein F47F6.9 [Caenorhabditis elegans] ref|NP_001022179.1| F47F6.9 [Caenorhabditis elegans] 1.0E-164
blast AAC71115 Hypothetical protein F47F6.4 [Caenorhabditis elegans] ref|NP_493934.1| F47F6.4 [Caenorhabditis elegans] 3.0E-91
blast AAC71115 Hypothetical protein F47F6.4 [Caenorhabditis elegans] ref|NP_493934.1| F47F6.4 [Caenorhabditis elegans] 7.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR001300 EMBL-EBI Peptidase C2, calpain 3.5E-8
Pfam IPR001300 EMBL-EBI Peptidase C2, calpain 1.3E-5
Sequence
Target Sequence 
>C. ELEGANS:179953_AT
gacgtttgatttcatcagtcaccccatcgaatcacaactcgacgacattcagcaattcat
tatagaagagggcgaaataatcaagagcgacactggtgaattgactgtctacaaattggg
tggccgttattccaatgtgtttgtttatgagaacaattgtagattcaactttattagtgt
ggaaggaagcctgtcgaattctttgcacaataattatttaactgcaacaaatggattgat
tgattcgagttttgaaattccaccgcaatctcgtgttatactagaagtagtctcgtgcga
atgggaatatttcagtgccaatttcaatattgagttcaaagttcttccctttatgtggac
tgtttgttactggttcgcgccacttgtggaatattttgttcctgaatcttcgttcaacta
ctcgtttcaaactccagtcgtgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTTTGATTTCATCAGTCACCCC 681 377 24 Antisense
TCACCCCATCGAATCACAACTCGAC 502 625 42 Antisense
AACTCGACGACATTCAGCAATTCAT 323 141 59 Antisense
GGGTGGCCGTTATTCCAATGTGTTT 90 499 141 Antisense
GGAAGCCTGTCGAATTCTTTGCACA 386 531 208 Antisense
AAATTCCACCGCAATCTCGTGTTAT 656 115 278 Antisense
AAGTTCTTCCCTTTATGTGGACTGT 106 157 362 Antisense
TGTGGACTGTTTGTTACTGGTTCGC 681 547 377 Antisense
ACTGGTTCGCGCCACTTGTGGAATA 682 93 392 Antisense
GAATCTTCGTTCAACTACTCGTTTC 156 327 427 Antisense
ACTCGTTTCAAACTCCAGTCGTGAT 304 99 443 Antisense
Sequence Source Affymetrix Proprietary Database