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[179952_at]

Description T07D3.7 /REP_DB=WormBase Gene ID /WP=CE13367 /TR=O16720 /GB=AAB66187.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 40      4grp_high_8_8 > 50      6grp_highest_nonorm > 70      6grp_total > 17      4grp_total > 61      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > Cu      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 556
1 2 3 4 range
A 709.1
(3)
P 		483.1
(0.5)
P 		443.4
(0.1)
P 		168.5
(-3)
P 		541
B 520.8
(3)
P 		477.4
(2.3)
P 		483.9
(2.4)
P 		152.8
(-3)
P 		368
C 679
(3)
P 		585.8
(1.9)
P 		466.2
(0.6)
P 		156.7
(-3)
P 		522
avr 636.3
(3) 		515.4
(1.5) 		464.5
(0.8) 		159.3
(-3) 		477

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 451
1 2 3 4 5 6 range
A 414.2
(2.1)
P 		446.7
(3)
P 		230.9
(-3)
P 		267.6
(-2)
P 		230
(-3)
P 		317.1
(-0.6)
P 		217
B 444.9
(3)
P 		369.1
(1.2)
P 		255.7
(-1.5)
P 		238.4
(-2)
P 		194.7
(-3)
P 		288.5
(-0.8)
P 		250
C 621.9
(3)
P 		323
(-1)
P 		244.4
(-2)
P 		170.6
(-3)
P 		260.6
(-1.8)
P 		223.9
(-2.3)
P 		451
avr 493.7
(3) 		379.6
(0.4) 		243.7
(-2.6) 		225.5
(-3) 		228.4
(-2.9) 		276.5
(-1.9) 		268
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 258.2
(3)
P 		104.9
(-0.9)
P 		115.9
(-0.7)
P 		24.7
(-3)
P 		234
B 166.1
(3)
P 		117.9
(0.8)
P 		112.1
(0.6)
P 		32.6
(-3)
P 		134
C 224.8
(3)
P 		168.4
(1.3)
P 		162.5
(1.1)
P 		26.4
(-3)
P 		198
avr 216.4
(3) 		130.4
(0.3) 		130.2
(0.3) 		27.9
(-3) 		189

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 76.3
(-1.6)
P 		158.9
(3)
P 		50.3
(-3)
P 		67.9
(-2)
P 		69.4
(-1.9)
P 		77.2
(-1.5)
P 		109
B 154.8
(3)
P 		122.9
(0.9)
P 		62.1
(-3)
P 		63.2
(-2.9)
P 		79.1
(-1.9)
P 		107.6
(-0.1)
P 		93
C 230.5
(3)
P 		98.6
(-1)
P 		62.2
(-2.1)
P 		34.3
(-3)
P 		84.3
(-1.5)
P 		75
(-1.8)
P 		196
avr 153.9
(3) 		126.8
(1.4) 		58.2
(-2.8) 		55.1
(-3) 		77.6
(-1.6) 		86.6
(-1.1) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179952_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4582
Sequence Type Exemplar sequence
Representative Public ID T07D3.7 NCBI
Target Description T07D3.7 /REP_DB=WormBase Gene ID /WP=CE13367 /TR=O16720 /GB=AAB66187.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182192(11), NM_061436(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182192 NCBI Caenorhabditis elegans Argonaute (plant)-Like Gene family member (alg-2) (alg-2) mRNA, complete cds. 11/11 None
NM_061436 NCBI Caenorhabditis elegans Argonaute (plant)-Like Gene family member (alg-2) (alg-2) mRNA, complete cds. 11/11 None
SNAP00000029304 ENSEMBL cdna:SNAP chromosome:CEL140:II:874168:878326:1 11/11 None
GENEFINDER00000029316 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:874168:878482:1 11/11 None
T07D3.7a ENSEMBL cdna:known chromosome:CEL140:II:873182:878951:1 gene:T07D3.7 11/11 A 
T07D3.7b ENSEMBL cdna:known chromosome:CEL140:II:874164:878482:1 gene:T07D3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:874167-878482(+) 100.0 100.0
Public Domain and Genome References
Ensembl T07D3.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66187 Argonaute (plant)-like gene protein 2, isoform a [Caenorhabditis elegans] ref|NP_871992.1| Argonaute (plant)-Like Gene family member (alg-2) [Caenorhabditis elegans] 0.0
blast AAO38604 Argonaute (plant)-like gene protein 2, isoform b [Caenorhabditis elegans] ref|NP_493837.1| Argonaute (plant)-Like Gene family member (alg-2) [Caenorhabditis elegans] pir||T32079 hypothetical protein T07D3.7 - Caenorhabditis elegans 0.0
blast CAE63062 Hypothetical protein CBG07340 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 6.8E-55
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 6.8E-55
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:179952_AT
cgtaacacgaggttcaagccagcccgaattgtggtctacagagatggagtgtctgagggt
caactcttcaatgtgctccaatatgagctccgcgcaattcgtgaagcttgtgtgatgctt
gagagtggataccagccaggaatcacatttatcgctgtgcaaaagagacatcacacaagg
ctcttcgccgcggataaagctgatcaagtaggaaaagcattcaacatcccaccaggaaca
actgtagatgtgggaatcacgcatccaacggaattcgacttcttcctctgctcccacgct
ggtatccaaggaacatcccgaccatctcactaccatgtgctctgggatgacaatgatctg
acggccgacgagcttcaacagttgacctaccaaatgtgtcatacctatgtaagatgcacg
aggtctgtgtcgatcccggcgccggcgtactatgcacatctggtggcgttccgtgctcgt
tatcacttggtcgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTAACACGAGGTTCAAGCCAGCCC 624 245 2065 Antisense
AAGCCAGCCCGAATTGTGGTCTACA 31 149 2080 Antisense
GAGGGTCAACTCTTCAATGTGCTCC 116 403 2119 Antisense
TGAGCTCCGCGCAATTCGTGAAGCT 244 569 2148 Antisense
AAGGCTCTTCGCCGCGGATAAAGCT 691 159 2241 Antisense
GGTATCCAAGGAACATCCCGACCAT 567 505 2365 Antisense
ATCTCACTACCATGTGCTCTGGGAT 265 33 2388 Antisense
ACAATGATCTGACGGCCGACGAGCT 180 115 2414 Antisense
GATGCACGAGGTCTGTGTCGATCCC 365 413 2477 Antisense
GGCGTACTATGCACATCTGGTGGCG 454 541 2508 Antisense
CGTGCTCGTTATCACTTGGTCGATA 220 245 2536 Antisense
Sequence Source Affymetrix Proprietary Database