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[179951_at]

Description K01H12.4 /REP_DB=WormBase Gene ID /WP=CE03456 /TR=Q21105 /GB=CAA92474.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 36.7
(-3)
A 		130.3
(0.4)
A 		63.1
(-2)
A 		202.6
(3)
M 		166
B 68.9
(-1.5)
P 		69.9
(-1.4)
A 		53.4
(-3)
A 		117.2
(3)
P 		64
C 76.8
(-1.6)
A 		72.5
(-1.7)
A 		38.5
(-3)
A 		201.6
(3)
A 		163
avr 60.8
(-2.6) 		90.9
(-1.1) 		51.7
(-3) 		173.8
(3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 65
(-2.5)
A 		47
(-3)
A 		73.3
(-2.3)
A 		49.8
(-2.9)
A 		126.4
(-0.8)
P 		259.9
(3)
P 		213
B 69
(-2.9)
P 		80.8
(-2.4)
A 		66.1
(-3)
A 		98.4
(-1.7)
A 		145.6
(0.3)
P 		212.5
(3)
P 		146
C 39.9
(-2.8)
A 		74.9
(-1.4)
P 		33.8
(-3)
A 		95.3
(-0.6)
A 		160.1
(1.9)
P 		187.9
(3)
P 		154
avr 58
(-3) 		67.6
(-2.6) 		57.7
(-3) 		81.2
(-2.1) 		144
(0.2) 		220.1
(3) 		162
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 13.4
(-3)
A 		28.3
(2.5)
A 		16.5
(-1.9)
A 		29.7
(3)
M 		16
B 22
(1.6)
P 		17.3
(-0.7)
A 		12.4
(-3)
A 		25
(3)
P 		13
C 25.4
(0.5)
A 		20.8
(-0.8)
A 		13.4
(-3)
A 		34
(3)
A 		21
avr 20.3
(-0.6) 		22.1
(0.1) 		14.1
(-3) 		29.6
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 12
(-3)
A 		16.7
(-2.5)
A 		16
(-2.5)
A 		12.6
(-2.9)
A 		38.2
(0.1)
P 		63.3
(3)
P 		51
B 24
(-2.3)
P 		26.9
(-2)
A 		16.1
(-3)
A 		26.1
(-2.1)
A 		59.2
(1.1)
P 		79.3
(3)
P 		63
C 14.8
(-2.3)
A 		22.8
(-1.4)
P 		8.6
(-3)
A 		19.2
(-1.8)
A 		51.8
(1.8)
P 		62.9
(3)
P 		54
avr 16.9
(-2.6) 		22.1
(-2.1) 		13.6
(-3) 		19.3
(-2.4) 		49.7
(0.9) 		68.5
(3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179951_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9386
Sequence Type Exemplar sequence
Representative Public ID K01H12.4 NCBI
Target Description K01H12.4 /REP_DB=WormBase Gene ID /WP=CE03456 /TR=Q21105 /GB=CAA92474.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069328(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069328 NCBI Caenorhabditis elegans K01H12.4 (K01H12.4) mRNA, complete cds. 11/11 None
SNAP00000037362 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9713197:9714777:1 11/11 None
GENEFINDER00000037365 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9713197:9714679:1 11/11 None
K01H12.4 ENSEMBL cdna:known chromosome:CEL140:IV:9713197:9714862:1 gene:K01H12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9713202-9714783(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K01H12.4
Entrez Gene 177805 Entrez gene
SwissProt Q21105 EMBL-EBI
WormBase CE03456 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92474 Hypothetical protein K01H12.4 [Caenorhabditis elegans] ref|NP_501729.1| K01H12.4 [Caenorhabditis elegans] 1.0E-174
blast CAA92474 Hypothetical protein K01H12.4 [Caenorhabditis elegans] ref|NP_501729.1| K01H12.4 [Caenorhabditis elegans] 1.0E-156
blast CAE56062 Hypothetical protein CBG23637 [Caenorhabditis briggsae] 1.0E-60
blast CAE56062 Hypothetical protein CBG23637 [Caenorhabditis briggsae] 2.0E-52
blast CAE74827 Hypothetical protein CBG22665 [Caenorhabditis briggsae] 1.0E-36
Sequence
Target Sequence 
>C. ELEGANS:179951_AT
tcccaagtgccatctacattccggcaaagcagaagcctcaaatgaccgtttcaataagtg
caacaactgcttcttcttgttccaacaaatcgctctaccgtaagcacattgaaaaactag
caattgagccattggaggacatcaaacacttgaagtgccgtggactgaagaagtcaaagc
cagatgacctttttccaaaagcaacttacgatgcgggaactggaaaacctaaaatggcgt
tgtctccgagttcaatggtgtcggtcgacctttcatatgcatctacaactgctaaatcca
atagtcttgcctatcaaccaatggagtttgtttcctctgatggacgcgtcaagctgtggc
ttcagcctcttgaaaagcaaaagaaaaaaaatagtgaaaagtccaaaaaacgtgaacgat
gtattgatgatgctccaattcctccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCAAGTGCCATCTACATTCCGGC 550 595 389 Antisense
AGAAGCCTCAAATGACCGTTTCAAT 222 69 419 Antisense
TAAGTGCAACAACTGCTTCTTCTTG 470 637 443 Antisense
TGTTCCAACAAATCGCTCTACCGTA 173 563 466 Antisense
AAATGGCGTTGTCTCCGAGTTCAAT 221 121 620 Antisense
GAGTTCAATGGTGTCGGTCGACCTT 710 395 636 Antisense
GTCGACCTTTCATATGCATCTACAA 39 475 652 Antisense
TAGTCTTGCCTATCAACCAATGGAG 30 649 690 Antisense
GTTTCCTCTGATGGACGCGTCAAGC 42 451 718 Antisense
AGCTGTGGCTTCAGCCTCTTGAAAA 338 77 740 Antisense
ATTGATGATGCTCCAATTCCTCCAA 344 5 811 Antisense
Sequence Source Affymetrix Proprietary Database