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[179949_at]

Description Y39E4B.9 /REP_DB=WormBase Gene ID /WP=CE21720 /TR=Q9U2K3 /GB=CAB54430.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 84      4grp_high_8_8 > 05      6grp_total > 65      4grp_total > 03      6grp_cgc > 57      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 74
(-1.6)
P 		46.3
(-3)
P 		60.9
(-2.3)
A 		168.9
(3)
P 		123
B 58.2
(-3)
P 		61.6
(-2.8)
A 		60.1
(-2.9)
P 		157.6
(3)
P 		99
C 72.3
(-2.4)
P 		66.1
(-2.6)
P 		56.2
(-3)
P 		210.2
(3)
P 		154
avr 68.2
(-2.5) 		58
(-3) 		59.1
(-2.9) 		178.9
(3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 90.6
(1.9)
A 		31.7
(-3)
P 		103.4
(3)
P 		75.9
(0.7)
P 		88.8
(1.8)
P 		103.3
(3)
P 		72
B 75.6
(-1.7)
P 		65.2
(-3)
P 		97.5
(1.1)
P 		101.6
(1.7)
P 		101.7
(1.7)
P 		112.1
(3)
P 		47
C 100.8
(2.1)
P 		106.1
(3)
P 		105.5
(2.9)
A 		69.1
(-3)
A 		95.2
(1.2)
P 		105
(2.8)
P 		37
avr 89
(0.3) 		67.7
(-3) 		102.1
(2.3) 		82.2
(-0.8) 		95.2
(1.2) 		106.8
(3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 26.9
(3)
P 		10.1
(-3)
P 		15.9
(-0.9)
A 		24.7
(2.2)
P 		17
B 18.6
(-1.6)
P 		15.2
(-2.6)
A 		13.9
(-3)
P 		33.6
(3)
P 		20
C 23.9
(-1.2)
P 		19
(-3)
P 		19.6
(-2.8)
P 		35.4
(3)
P 		16
avr 23.1
(0) 		14.8
(-3) 		16.5
(-2.4) 		31.2
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 16.7
(-0.9)
A 		11.3
(-3)
P 		22.5
(1.3)
P 		19.2
(0.1)
P 		26.8
(3)
P 		25.2
(2.4)
P 		16
B 26.3
(-1.6)
P 		21.7
(-3)
P 		23.7
(-2.4)
P 		26.9
(-1.4)
P 		41.3
(2.9)
P 		41.8
(3)
P 		20
C 37.4
(3)
P 		32.4
(1.7)
P 		26.8
(0.3)
A 		13.9
(-3)
A 		30.8
(1.3)
P 		35.2
(2.4)
P 		24
avr 26.8
(-0.1) 		21.8
(-2.2) 		24.3
(-1.2) 		20
(-3) 		33
(2.5) 		34.1
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179949_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6764
Sequence Type Exemplar sequence
Representative Public ID Y39E4B.9 NCBI
Target Description Y39E4B.9 /REP_DB=WormBase Gene ID /WP=CE21720 /TR=Q9U2K3 /GB=CAB54430.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067314
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000012033 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13133530:13139127:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067314 8/11 Cross Hyb Matching Probes None
Y39E4B.9 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13133525-13136744(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAS21306 BRE-2 [Caenorhabditis elegans] 0.0
blast CAB54430 Hypothetical protein Y39E4B.9 [Caenorhabditis elegans] ref|NP_499715.2| BT (Bacillus thuringiensis) toxin REsistant family member (bre-2) [Caenorhabditis elegans] 1.0E-159
blast CAE75079 Hypothetical protein CBG22997 [Caenorhabditis briggsae] 1.0E-113
Protein Domains
Database ID Description E-Value
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 2.0E-84
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000012033 1 89-107
Sequence
Target Sequence 
>C. ELEGANS:179949_AT
gacaatatccttgctactttactcaatttcaaaaacaaaatcacccaatctaattggcaa
aatcgatgaagacgtccttttctatccggatcaactcaccccactaatcaatgataaaac
aatcaatacgtcaactttttccatttacggtgagaaatatgaagctggagttgcagttaa
tcatggggaagacaatgcaaaatggcaaatttccaaaaactctttcaaatgctcagttta
tccatcatatttatcgggaccaacgtattttttgacacgaaaagctgcaaaacggattgt
cgaagcaacaaagcataggaaatttatttctgtagatgttgaagatgtgttcattactgg
cttgcttgccggcgacgttgggatcaaaaaaaatcaacttccatttatgtatatgataga
ggaagcgacaaacgaccgggaatcttatgaaattctggcatggcacactaaaaagaggga
ccaacaatatatagaggcctttgaaagcctgaaactgaaccgttgtaaatcgtgtcgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAATATCCTTGCTACTTTACTCA 610 363 513 Antisense
TGAAGACGTCCTTTTCTATCCGGAT 286 573 579 Antisense
TCAACTCACCCCACTAATCAATGAT 574 629 603 Antisense
AATCAATACGTCAACTTTTTCCATT 554 171 633 Antisense
AAATGCTCAGTTTATCCATCATATT 80 119 739 Antisense
CCATCATATTTATCGGGACCAACGT 323 269 754 Antisense
TGTGTTCATTACTGGCTTGCTTGCC 589 555 858 Antisense
CTTGCCGGCGACGTTGGGATCAAAA 33 219 877 Antisense
GGAAGCGACAAACGACCGGGAATCT 704 529 933 Antisense
GAAATTCTGGCATGGCACACTAAAA 680 363 961 Antisense
TGAACCGTTGTAAATCGTGTCGAAA 374 545 1028 Antisense
Sequence Source Affymetrix Proprietary Database