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[179948_at]

Description C23H3.5 /REP_DB=WormBase Gene ID /WP=CE08324 /TR=P91078 /GB=AAK31444.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 74      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 73      6grp_total > 65      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 271
1 2 3 4 range
A 575.2
(3)
P 		469.5
(-1)
P 		415.7
(-3)
P 		543.1
(1.8)
P 		160
B 565.3
(3)
P 		552.6
(2.6)
P 		373.3
(-3)
P 		563.8
(3)
P 		192
C 643.8
(3)
P 		545.4
(-1.1)
P 		500.4
(-3)
P 		591.4
(0.8)
P 		143
avr 594.8
(3) 		522.5
(0.4) 		429.8
(-3) 		566.1
(2) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 487.2
(-1.6)
P 		451.1
(-3)
P 		604.1
(3)
P 		601.3
(2.9)
P 		454.8
(-2.9)
P 		533.7
(0.2)
P 		153
B 470.7
(-3)
P 		535.2
(0)
P 		513.1
(-1)
P 		576.7
(1.9)
P 		515.5
(-0.9)
P 		599.6
(3)
P 		129
C 511.7
(-1.8)
P 		526.9
(-1.3)
P 		583
(0.7)
P 		597.3
(1.2)
P 		478.7
(-3)
P 		648.8
(3)
P 		170
avr 489.9
(-2.6) 		504.4
(-1.8) 		566.7
(1.5) 		591.8
(2.9) 		483
(-3) 		594
(3) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 209.4
(3)
P 		101.9
(-2)
P 		108.7
(-1.7)
P 		79.5
(-3)
P 		130
B 180.3
(3)
P 		136.5
(0.2)
P 		86.5
(-3)
P 		120.1
(-0.9)
P 		94
C 213.1
(3)
P 		156.8
(0)
P 		174.4
(1)
P 		99.7
(-3)
P 		113
avr 200.9
(3) 		131.7
(-1.1) 		123.2
(-1.6) 		99.8
(-3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 89.8
(-3)
P 		160.4
(3)
P 		131.6
(0.6)
P 		152.5
(2.3)
P 		137.2
(1)
P 		129.9
(0.4)
P 		71
B 163.8
(-0.6)
P 		178.2
(0.2)
P 		124.6
(-3)
P 		152.8
(-1.3)
P 		209.4
(2.1)
P 		223.6
(3)
P 		99
C 189.7
(1.3)
P 		160.8
(-0.5)
P 		148.4
(-1.3)
P 		120.1
(-3)
P 		154.9
(-0.8)
P 		217.2
(3)
P 		97
avr 147.8
(-1.6) 		166.5
(0.4) 		134.9
(-3) 		141.8
(-2.3) 		167.2
(0.5) 		190.2
(3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179948_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4150
Sequence Type Exemplar sequence
Representative Public ID C23H3.5 NCBI
Target Description C23H3.5 /REP_DB=WormBase Gene ID /WP=CE08324 /TR=P91078 /GB=AAK31444.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061246(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061246 NCBI Caenorhabditis elegans C23H3.5 (C23H3.5) mRNA, complete cds. 11/11 None
SNAP00000015914 ENSEMBL cdna:SNAP chromosome:CEL140:II:47584:51147:1 11/11 None
C23H3.5.2 ENSEMBL cdna:known chromosome:CEL140:II:47578:50045:1 gene:C23H3.5 11/11 None
C23H3.5.1 ENSEMBL cdna:known chromosome:CEL140:II:47580:50045:1 gene:C23H3.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000015932 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:47583-49863(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C23H3.5
Entrez Gene 173387 Entrez gene
SwissProt P91078 EMBL-EBI
WormBase CE08324 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31444 Hypothetical protein C23H3.5 [Caenorhabditis elegans] ref|NP_493647.1| C23H3.5 [Caenorhabditis elegans] 0.0
blast CAE62822 Hypothetical protein CBG07001 [Caenorhabditis briggsae] 1.0E-117
Sequence
Target Sequence 
>C. ELEGANS:179948_AT
agcagccggtgtgatgatgacagccgatttgaaatttccgaaagaacttaatgatctaga
agttgtacggaagattaggcacgagtcaagaatcttcgatgaaaggagaatggaaacttc
aaatctaacagcaatcagccgtcttttgaagtataatgctgaaacaatgaagcaagctca
aacggagaatgatttgagaatgaaaacatcagaagttctaactgatattcttgccgctga
tttgagttctccaatttctacgcagcttcagaagaaaaagacgaacaattccgtgcaaat
ggacatgtcagatttgggaatctcaatttcacgagaagatatgagcttcttgaatacgac
aggtcaatcctgttcatcaatacctgaaattgaaagcgacgaagatgctatattgttttc
cccgaatttgtttgcttcaaaatccataaaaattaaaaataagttgaaaagaatgaatcc
ggttgccgaatcttctactaaaataacgaagacgactagttttttatcagcgacaatgga
tattctaaatagctcacaagatgctgctggactacctagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAGCCGGTGTGATGATGACAGCC 532 77 615 Antisense
CTAACAGCAATCAGCCGTCTTTTGA 339 225 739 Antisense
GTTCTAACTGATATTCTTGCCGCTG 398 443 829 Antisense
TTGCCGCTGATTTGAGTTCTCCAAT 277 703 845 Antisense
TCTCCAATTTCTACGCAGCTTCAGA 662 607 862 Antisense
TGAGCTTCTTGAATACGACAGGTCA 292 569 956 Antisense
GTCAATCCTGTTCATCAATACCTGA 673 463 977 Antisense
ATGCTATATTGTTTTCCCCGAATTT 417 43 1019 Antisense
GAATCCGGTTGCCGAATCTTCTACT 441 329 1089 Antisense
GACGACTAGTTTTTTATCAGCGACA 463 379 1125 Antisense
ACAAGATGCTGCTGGACTACCTAGG 579 111 1170 Antisense
Sequence Source Affymetrix Proprietary Database