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[179947_at]

Description T02C5.1 /REP_DB=WormBase Gene ID /WP=CE04848 /TR=Q22095 /GB=AAB36865.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 49      6grp_total > 84      4grp_total > 08      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2176
1 2 3 4 range
A 3346
(-3)
P 		3987.7
(1)
P 		3417.2
(-2.6)
P 		4312
(3)
P 		966
B 3585.3
(-1.4)
P 		3019.1
(-3)
P 		4180.8
(0.2)
P 		5195
(3)
P 		2176
C 3635.1
(-1.3)
P 		3163.1
(-3)
P 		4101.4
(0.4)
P 		4836.8
(3)
P 		1674
avr 3522.1
(-2.4) 		3390
(-3) 		3899.8
(-0.8) 		4781.3
(3) 		1391

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3437
1 2 3 4 5 6 range
A 2592.1
(-3)
P 		3699.7
(-1.1)
P 		3370.7
(-1.6)
P 		5066.6
(1.3)
P 		6028.8
(3)
P 		5270.6
(1.7)
P 		3437
B 2915.1
(-2.9)
P 		2850.8
(-3)
P 		3789
(-1.1)
P 		5610.7
(2.7)
P 		5756.4
(3)
P 		5323.1
(2.1)
P 		2906
C 3053.6
(-2.8)
P 		2977.7
(-3)
P 		3985.1
(-0.6)
P 		4530.6
(0.6)
P 		5461.8
(2.8)
P 		5533.2
(3)
P 		2556
avr 2853.6
(-3) 		3176.1
(-2.3) 		3714.9
(-1.2) 		5069.3
(1.6) 		5749
(3) 		5375.6
(2.2) 		2895
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 798
1 2 3 4 range
A 1218.3
(3)
P 		865.6
(-0.6)
P 		893.3
(-0.3)
P 		631.2
(-3)
P 		587
B 1143.3
(3)
P 		745.7
(-3)
P 		968.8
(0.4)
P 		1107.1
(2.5)
P 		398
C 1203.3
(0.8)
P 		909.4
(-2.1)
P 		1429.5
(3)
P 		815.6
(-3)
P 		614
avr 1188.3
(3) 		840.2
(-3) 		1097.2
(1.4) 		851.3
(-2.8) 		348

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1861
1 2 3 4 5 6 range
A 477.8
(-3)
P 		1315.8
(0.7)
P 		734.1
(-1.9)
P 		1285
(0.6)
P 		1819.2
(3)
P 		1283.2
(0.6)
P 		1341
B 1014.3
(-2.6)
P 		948.9
(-2.9)
P 		920.1
(-3)
P 		1486.1
(-0.6)
P 		2338.7
(3)
P 		1985
(1.5)
P 		1419
C 1131.8
(-1.6)
P 		908.6
(-3)
P 		1014.3
(-2.3)
P 		911.1
(-3)
P 		1767.4
(2.5)
P 		1852.3
(3)
P 		944
avr 874.6
(-3) 		1057.8
(-2) 		889.5
(-2.9) 		1227.4
(-1.1) 		1975.1
(3) 		1706.8
(1.5) 		1101
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179947_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18542
Sequence Type Exemplar sequence
Representative Public ID T02C5.1 NCBI
Target Description T02C5.1 /REP_DB=WormBase Gene ID /WP=CE04848 /TR=Q22095 /GB=AAB36865.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029698(11), NM_001029699(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029698 NCBI Caenorhabditis elegans T02C5.1a (T02C5.1) mRNA, complete cds. 11/11 None
NM_001029699 NCBI Caenorhabditis elegans T02C5.1b (T02C5.1) mRNA, complete cds. 11/11 None
SNAP00000029790 ENSEMBL cdna:SNAP chromosome:CEL140:X:2694929:2698083:1 11/11 None
GENEFINDER00000029801 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2694929:2698083:1 11/11 None
T02C5.1a ENSEMBL cdna:known chromosome:CEL140:X:2694907:2698242:1 gene:T02C5.1 11/11 None
T02C5.1b ENSEMBL cdna:known chromosome:CEL140:X:2694929:2698083:1 gene:T02C5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2694928-2698083(+) 100.0 100.0
Public Domain and Genome References
Ensembl T02C5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB36865 Hypothetical protein T02C5.1a [Caenorhabditis elegans] ref|NP_001024869.1| T02C5.1a [Caenorhabditis elegans] 0.0
blast AAP82639 Hypothetical protein T02C5.1b [Caenorhabditis elegans] ref|NP_001024870.1| T02C5.1b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001368 EMBL-EBI TNFR/CD27/30/40/95 cysteine-rich region 3.0E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024869.1 1 303-325
NP_001024870.1 1 320-342
T02C5.1a 1 303-325
T02C5.1b 1 320-342
SNAP00000029790 1 294-316
GENEFINDER00000029801 1 329-351
Sequence
Target Sequence 
>C. ELEGANS:179947_AT
gttccgtcttctgttaaaattgcgaaaggaaaaactacaattgtttctcatgaggaagcc
gaggccacattccgagagattgaagccctaccaaaccctgtgcgcaaaatcaaccaagac
gattatgactcctctgaagagtcaaacgagcgtgaaatcaagtgggacaattgggttgat
gatcaagtgaaaccaatcagaacgaacgtcgaagttgtcgaagccgaggagattgaggaa
tttgaccagctcatcgcaaagtcgctcaaaaatagaagaaagatcttgaatgatgagaca
gaaagctcaccactattcattaaaaacttgggttcagtctttgtcatctgtatgggaatg
atcattgttgtcactattctctctatcacatatgctttgatgcgtgcggaaagaaaggaa
ttcttgggcgtccccaccgactcgcaggactatcatatgatcattgattccagcaattat
atcgagaagcttgaaagcaaggaaaaacaggccagccgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCCGTCTTCTGTTAAAATTGCGA 340 439 640 Antisense
CATGAGGAAGCCGAGGCCACATTCC 645 207 688 Antisense
GAGAGATTGAAGCCCTACCAAACCC 527 395 713 Antisense
CAAACCCTGTGCGCAAAATCAACCA 593 191 731 Antisense
CCAAGACGATTATGACTCCTCTGAA 232 275 753 Antisense
GAGGAATTTGACCAGCTCATCGCAA 528 405 874 Antisense
GACAGAAAGCTCACCACTATTCATT 105 367 936 Antisense
AAACTTGGGTTCAGTCTTTGTCATC 442 127 963 Antisense
TGTTGTCACTATTCTCTCTATCACA 567 563 1005 Antisense
ACCGACTCGCAGGACTATCATATGA 672 87 1075 Antisense
GCAAGGAAAAACAGGCCAGCCGTCA 102 313 1136 Antisense
Sequence Source Affymetrix Proprietary Database