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[179946_s_at]

Description C37A2.1 /REP_DB=WormBase Gene ID /WP=CE08610 /TR=O01507 /GB=AAB52446.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 48      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 85      6grp_total > 38      4grp_total > 59      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 992
1 2 3 4 range
A 892.4
(0.2)
P 		1197.7
(3)
P 		1172.9
(2.8)
P 		540.2
(-3)
P 		658
B 916
(0.5)
P 		1084
(1.8)
P 		1235.5
(3)
P 		465.5
(-3)
P 		770
C 937.4
(-0.4)
P 		1284.1
(1.9)
P 		1457.5
(3)
P 		526
(-3)
P 		932
avr 915.3
(0.1) 		1188.6
(2.2) 		1288.6
(3) 		510.6
(-3) 		778

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 858
1 2 3 4 5 6 range
A 722.4
(-1.2)
P 		1067.6
(3)
P 		570.4
(-3)
P 		629
(-2.3)
P 		611
(-2.5)
P 		995.8
(2.1)
P 		497
B 796.9
(2.7)
P 		714.4
(0.5)
P 		585.3
(-3)
P 		661
(-1)
P 		726.2
(0.8)
P 		807.6
(3)
P 		222
C 1235.7
(3)
P 		806.3
(-0)
P 		754.2
(-0.4)
P 		378.1
(-3)
P 		807.7
(0)
P 		751.9
(-0.4)
P 		858
avr 918.3
(3) 		862.8
(2.1) 		636.6
(-1.7) 		556
(-3) 		715
(-0.4) 		851.8
(1.9) 		362
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 429
1 2 3 4 range
A 324.9
(3)
P 		260
(1.4)
P 		306.6
(2.6)
P 		79.1
(-3)
P 		246
B 292.1
(3)
P 		267.7
(2.2)
P 		286.3
(2.8)
P 		99.2
(-3)
P 		193
C 310.3
(0.2)
P 		369.2
(1)
P 		508
(3)
P 		88.7
(-3)
P 		419
avr 309.1
(1.8) 		299
(1.5) 		367
(3) 		89
(-3) 		278

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 382
1 2 3 4 5 6 range
A 133.2
(-2.8)
P 		379.7
(3)
P 		124.2
(-3)
P 		159.5
(-2.2)
P 		184.4
(-1.6)
P 		242.5
(-0.2)
P 		256
B 277.3
(2.1)
P 		237.8
(0.6)
P 		142.1
(-3)
P 		175.1
(-1.8)
P 		295
(2.8)
P 		301.1
(3)
P 		159
C 458
(3)
P 		246
(-0.3)
P 		192
(-1.2)
P 		76
(-3)
P 		261.4
(-0.1)
P 		251.7
(-0.2)
P 		382
avr 289.5
(3) 		287.8
(2.9) 		152.8
(-2.4) 		136.9
(-3) 		246.9
(1.3) 		265.1
(2) 		153
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179946_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1631
Sequence Type Exemplar sequence
Representative Public ID C37A2.1 NCBI
Target Description C37A2.1 /REP_DB=WormBase Gene ID /WP=CE08610 /TR=O01507 /GB=AAB52446.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170891(11), NM_170890(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170891 NCBI Caenorhabditis elegans E02D9.1b (E02D9.1) mRNA, complete cds. 11/11 None
NM_170890 NCBI Caenorhabditis elegans E02D9.1c (E02D9.1) mRNA, complete cds. 11/11 None
SNAP00000044086 ENSEMBL cdna:SNAP chromosome:CEL140:I:6808558:6809661:1 11/11 None
GENEFINDER00000044089 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6808558:6812927:1 11/11 None
E02D9.1b.1 ENSEMBL cdna:known chromosome:CEL140:I:6808518:6810102:1 gene:E02D9.1 11/11 None
E02D9.1b.2 ENSEMBL cdna:known chromosome:CEL140:I:6808520:6810082:1 gene:E02D9.1 11/11 None
E02D9.1b.3 ENSEMBL cdna:known chromosome:CEL140:I:6808520:6810040:1 gene:E02D9.1 11/11 None
E02D9.1c ENSEMBL cdna:known chromosome:CEL140:I:6808558:6812927:1 gene:E02D9.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172405 4 2 NM_170890 175317_s_at (11), 179946_s_at (11)
NM_170891 179946_s_at (11)
NM_170892 175317_s_at (11)
NM_170893 175317_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6808486-6809718(+) 81.12 100.0
Public Domain and Genome References
Ensembl E02D9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_740881 E02D9.1a [Caenorhabditis elegans] gb|AAC78159.2| Hypothetical protein E02D9.1a [Caenorhabditis elegans] 0.0
blast CAE67310 Hypothetical protein CBG12765 [Caenorhabditis briggsae] 1.0E-148
blast NP_740881 E02D9.1a [Caenorhabditis elegans] gb|AAC78159.2| Hypothetical protein E02D9.1a [Caenorhabditis elegans] 1.0E-123
blast NP_740882 E02D9.1d [Caenorhabditis elegans] gb|AAY44016.1| Hypothetical protein E02D9.1d [Caenorhabditis elegans] 1.0E-107
blast NP_740882 E02D9.1d [Caenorhabditis elegans] gb|AAY44016.1| Hypothetical protein E02D9.1d [Caenorhabditis elegans] 1.0E-102
blast CAE67310 Hypothetical protein CBG12765 [Caenorhabditis briggsae] 1.0E-100
blast NP_740879 E02D9.1c [Caenorhabditis elegans] gb|AAY44015.1| Hypothetical protein E02D9.1c [Caenorhabditis elegans] 3.0E-99
blast NP_740880 E02D9.1b [Caenorhabditis elegans] gb|AAM81088.1| Hypothetical protein E02D9.1b [Caenorhabditis elegans] 3.0E-99
Protein Families
Method ID Description E-Value
hanks 1.9.3 AGC group; AGC Other; Mast205 1.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 6.3E-37
Pfam IPR000719 EMBL-EBI Protein kinase 0.26
Pfam IPR000719 EMBL-EBI Protein kinase 1.1E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000044089 1 735-757
Sequence
Target Sequence 
>C. ELEGANS:179946_S_AT
gtggccaagccagttaaggtttgcaagaagattcttgttccgatttaccgtcatccaaac
ttcaacttcatcggtaaagttcttggaccgaagggagcaactctccaaacgctatgcaag
acccacaaatgtcatatttacattttgggacgtggatccaccaaggatcgtgagaaggag
gctgagcttttggcatctggagatccacaacacgctcatttcagtgggccccttcacgta
aaggttgaaactgttgctccagcatacattgcctacggacgtgtcgctgcggtaattgag
gagttgtcaagaattttgcaaccgattcatgaagatacaactccggctcatttgaaaaac
ggctccggagatggtgaagaaaaggaagacgaagaaaagaaagaaggcggagaaggtggt
ggaagaggtggacgcggtgggcgtggaggatttagaggaggcttccgtggaggacgtgga
ggattcggtggacctggtggaccaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCCAAGCCAGTTAAGGTTTGCA 110 493 379 Antisense
GATTCTTGTTCCGATTTACCGTCAT 456 431 408 Antisense
GAGCAACTCTCCAAACGCTATGCAA 40 391 473 Antisense
AACGCTATGCAAGACCCACAAATGT 547 145 486 Antisense
GCTGAGCTTTTGGCATCTGGAGATC 537 295 559 Antisense
GATCCACAACACGCTCATTTCAGTG 657 415 580 Antisense
TCCAGCATACATTGCCTACGGACGT 141 589 636 Antisense
CTACGGACGTGTCGCTGCGGTAATT 519 225 651 Antisense
GAAGATACAACTCCGGCTCATTTGA 57 339 709 Antisense
GGCTCATTTGAAAAACGGCTCCGGA 610 537 723 Antisense
ATTCGGTGGACCTGGTGGACCAATG 456 1 861 Antisense
Sequence Source Affymetrix Proprietary Database