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[179944_at]

Description F53C3.7 /REP_DB=WormBase Gene ID /WP=CE19445 /TR=Q9TXT2 /GB=AAC67458.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 53
(3)
A 		35.1
(0.4)
A 		33.8
(0.2)
A 		12
(-3)
A 		41
B 21.6
(-3)
A 		45.8
(2.4)
A 		42.5
(1.7)
A 		48.4
(3)
A 		27
C 50.5
(0.2)
A 		13.2
(-3)
A 		52.2
(0.3)
A 		83.9
(3)
A 		71
avr 41.7
(0.7) 		31.4
(-3) 		42.8
(1.1) 		48.1
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 23.7
(0.4)
A 		24.5
(1)
A 		27.5
(3)
A 		27.4
(2.9)
A 		20.7
(-1.6)
A 		18.6
(-3)
A 		9
B 30.1
(3)
A 		8.1
(-2.8)
A 		23
(1.1)
A 		7.2
(-3)
A 		22.2
(0.9)
A 		21.2
(0.7)
A 		23
C 13.7
(-0.4)
A 		15.7
(0.3)
A 		23.8
(3)
A 		6
(-3)
A 		16.3
(0.5)
A 		20.9
(2)
A 		18
avr 22.5
(1.8) 		16.1
(-1.6) 		24.8
(3) 		13.5
(-3) 		19.7
(0.3) 		20.2
(0.6) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 19.3
(3)
A 		7.6
(-1)
A 		8.8
(-0.6)
A 		1.8
(-3)
A 		18
B 6.9
(-3)
A 		11.3
(3)
A 		9.9
(1.1)
A 		10.3
(1.6)
A 		4
C 16.7
(2.4)
A 		3.8
(-3)
A 		18.2
(3)
A 		14.1
(1.3)
A 		14
avr 14.3
(3) 		7.6
(-3) 		12.3
(1.2) 		8.7
(-2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 4.4
(-3)
A 		8.7
(3)
A 		6
(-0.8)
A 		7
(0.6)
A 		6.3
(-0.3)
A 		4.5
(-2.9)
A 		4
B 10.5
(3)
A 		2.7
(-2.4)
A 		5.6
(-0.4)
A 		1.9
(-3)
A 		9
(2)
A 		7.9
(1.2)
A 		9
C 5.1
(1)
A 		4.8
(0.7)
A 		6.1
(2.1)
A 		1.2
(-3)
A 		5.3
(1.2)
A 		7
(3)
A 		6
avr 6.7
(2.7) 		5.4
(0.4) 		5.9
(1.3) 		3.4
(-3) 		6.9
(3) 		6.5
(2.3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179944_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4979
Sequence Type Exemplar sequence
Representative Public ID F53C3.7 NCBI
Target Description F53C3.7 /REP_DB=WormBase Gene ID /WP=CE19445 /TR=Q9TXT2 /GB=AAC67458.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062285(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062285 NCBI Caenorhabditis elegans F53C3.7 (F53C3.7) mRNA, complete cds. 11/11 None
SNAP00000027220 ENSEMBL cdna:SNAP chromosome:CEL140:II:3895074:3896232:1 9/11 None
GENEFINDER00000027233 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3889423:3896511:1 11/11 None
F53C3.7 ENSEMBL cdna:known chromosome:CEL140:II:3894834:3896232:1 gene:F53C3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3894832-3896231(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53C3.7
Entrez Gene 186161 Entrez gene
SwissProt Q9TXT2 EMBL-EBI
WormBase CE19445 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67458 Hypothetical protein F53C3.7 [Caenorhabditis elegans] ref|NP_494686.1| F53C3.7 [Caenorhabditis elegans] 1.0E-160
blast AAC67458 Hypothetical protein F53C3.7 [Caenorhabditis elegans] ref|NP_494686.1| F53C3.7 [Caenorhabditis elegans] 1.0E-129
blast AAC67458 Hypothetical protein F53C3.7 [Caenorhabditis elegans] ref|NP_494686.1| F53C3.7 [Caenorhabditis elegans] 2.0E-79
blast AAC67459 Hypothetical protein F53C3.8 [Caenorhabditis elegans] ref|NP_494685.1| F53C3.8 [Caenorhabditis elegans] 1.0E-42
Sequence
Target Sequence 
>C. ELEGANS:179944_AT
gggaagcatactatccagctcccagcatagcagattccgaaaatatgggttttgttgcaa
cttgggatgagcatcttgccagggacagagagccggttagagatgtggagcaacctggaa
tttccaatggagatgccgagatccaagaaattgacgaagatgacatagaaattatcgagg
atccaaatgttgcacctgaaattattattgaagcagagctcactccacagcgtcaagtca
acaggaaagacgttacgattgaagtcatcgacctggctagtgatggcgagtcagaaacag
aaaacgtatcttcacaaaatgtagagaaattggtttctgaagctggtgaggcttctgaag
ctactgaagcgaaacgccgaaaaagaaagcaaaggggccagcaatcttgttggactcgga
agagacaaaaaggaacatatttgaaaaagaatcaagaaagtggtttgggggacaagaaaa
gaagaagaacgtcgacacccacggaagaagaaaatcatttgagaaaaaataaaagtgtca
agaggaagatgagctccatttcggacatcggaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAAGCATACTATCCAGCTCCCAG 178 495 368 Antisense
AGCTCCCAGCATAGCAGATTCCGAA 173 81 384 Antisense
TGGGATGAGCATCTTGCCAGGGACA 423 553 430 Antisense
GCCAGGGACAGAGAGCCGGTTAGAG 297 207 445 Antisense
GAGATGTGGAGCAACCTGGAATTTC 555 395 467 Antisense
GGATCCAAATGTTGCACCTGAAATT 710 511 546 Antisense
ACTCCACAGCGTCAAGTCAACAGGA 94 99 589 Antisense
TGAAGTCATCGACCTGGCTAGTGAT 152 573 627 Antisense
AAGCTGGTGAGGCTTCTGAAGCTAC 494 149 707 Antisense
GGGGCCAGCAATCTTGTTGGACTCG 313 497 761 Antisense
TGAGCTCCATTTCGGACATCGGAAC 453 567 917 Antisense
Sequence Source Affymetrix Proprietary Database