[Home] | [Total List]

[179942_at]

Description M01G12.9 /REP_DB=WormBase Gene ID /WP=CE18072 /TR=O62317 /GB=CAB04620.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 63.7
(1.9)
A 		10.7
(-3)
A 		33.3
(-0.9)
A 		75.5
(3)
A 		65
B 73.7
(-1.1)
A 		96.3
(3)
A 		63.6
(-3)
A 		65.2
(-2.7)
A 		33
C 88.4
(1.9)
A 		30.9
(-3)
A 		102
(3)
A 		71.9
(0.5)
A 		71
avr 75.3
(3) 		46
(-3) 		66.3
(1.2) 		70.9
(2.1) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 8.9
(-3)
A 		95.4
(3)
A 		53.1
(0.1)
A 		49.7
(-0.1)
A 		8.3
(-3)
A 		59.5
(0.5)
A 		87
B 58.4
(0.7)
A 		19.6
(-2.1)
A 		90.1
(3)
A 		7.1
(-3)
A 		30.2
(-1.3)
A 		32.2
(-1.2)
A 		83
C 83.9
(3)
A 		29.1
(-2)
A 		41.9
(-0.8)
A 		17.8
(-3)
A 		45.4
(-0.5)
A 		38.1
(-1.2)
A 		66
avr 50.4
(1.2) 		48
(0.8) 		61.7
(3) 		24.9
(-3) 		28
(-2.5) 		43.3
(-0) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 23.2
(3)
A 		2.3
(-3)
A 		8.7
(-1.2)
A 		11.1
(-0.5)
A 		21
B 23.5
(2.8)
A 		23.8
(3)
A 		14.7
(-2.5)
A 		13.9
(-3)
A 		10
C 29.3
(1.6)
A 		8.9
(-3)
A 		35.5
(3)
A 		12.1
(-2.3)
A 		27
avr 25.3
(3) 		11.7
(-3) 		19.6
(0.5) 		12.4
(-2.7) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 1.6
(-3)
A 		33.9
(3)
A 		11.6
(-1.1)
A 		12.6
(-1)
A 		2.5
(-2.8)
A 		14.5
(-0.6)
A 		32
B 20.3
(2.5)
A 		6.5
(-1.6)
A 		21.9
(3)
A 		1.9
(-3)
A 		12.3
(0.1)
A 		12
(0)
A 		20
C 31.1
(3)
A 		8.9
(-1.8)
A 		10.7
(-1.5)
A 		3.6
(-3)
A 		14.7
(-0.6)
A 		12.8
(-1)
A 		28
avr 17.7
(3) 		16.4
(2.3) 		14.7
(1.5) 		6
(-3) 		9.8
(-1.1) 		13.1
(0.6) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179942_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.344
Sequence Type Exemplar sequence
Representative Public ID M01G12.9 NCBI
Target Description M01G12.9 /REP_DB=WormBase Gene ID /WP=CE18072 /TR=O62317 /GB=CAB04620.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060658(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060658 NCBI Caenorhabditis elegans M01G12.9 (M01G12.9) mRNA, complete cds. 11/11 None
SNAP00000024221 ENSEMBL cdna:SNAP chromosome:CEL140:I:12117589:12120495:-1 11/11 None
GENEFINDER00000024231 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12117589:12120495:-1 11/11 None
M01G12.9 ENSEMBL cdna:known chromosome:CEL140:I:12119316:12120495:-1 gene:M01G12.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12119246-12120426(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M01G12.9
Entrez Gene 187385 Entrez gene
SwissProt O62317 EMBL-EBI
WormBase CE18072 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04620 Hypothetical protein M01G12.9 [Caenorhabditis elegans] ref|NP_493059.1| M01G12.9 [Caenorhabditis elegans] 1.0E-153
blast CAB04620 Hypothetical protein M01G12.9 [Caenorhabditis elegans] ref|NP_493059.1| M01G12.9 [Caenorhabditis elegans] 1.0E-151
blast CAB60387 Hypothetical protein Y47H10A.5 [Caenorhabditis elegans] ref|NP_493056.1| Y47H10A.5 [Caenorhabditis elegans] 6.0E-39
blast CAB60387 Hypothetical protein Y47H10A.5 [Caenorhabditis elegans] ref|NP_493056.1| Y47H10A.5 [Caenorhabditis elegans] 1.0E-38
blast CAB60385 Hypothetical protein Y47H10A.3 [Caenorhabditis elegans] ref|NP_493054.2| Y47H10A.3 [Caenorhabditis elegans] 3.0E-36
Sequence
Target Sequence 
>C. ELEGANS:179942_AT
gggtgggcaggcgaatcgaaacccaattttgttatgaatagaaatgtgataggagcaatt
ccgtcatcgaccggcgtagaaaattttatcgttttcaaaacgaacgatgttcaggttata
gtgaaaactccgaaagaaaaaggtcaggaatcagaaggcaatcaaatggaaccatggaaa
tcactcatttatggtgtaaacttcgaacatcattgcaccaaaacagcaaatgaaccattg
cctaccaatgatgcagttacgaaggcagtattgaaggcgcatgttccaagaacacaagaa
ggttcaaataactcgtcatatagtattctctactcggcacagattgacggtatcgatgat
aaacgtcaacactacgagatgaaggttctcaatggagggctaacaaagtatcatctggaa
aatagttcctgctggttttactggcaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTGGGCAGGCGAATCGAAACCCA 390 493 226 Antisense
GATAGGAGCAATTCCGTCATCGACC 411 425 273 Antisense
ATTCCGTCATCGACCGGCGTAGAAA 186 9 283 Antisense
GTAAACTTCGAACATCATTGCACCA 410 461 421 Antisense
AGCAAATGAACCATTGCCTACCAAT 326 71 450 Antisense
GCCTACCAATGATGCAGTTACGAAG 710 277 465 Antisense
GGCAGTATTGAAGGCGCATGTTCCA 302 535 489 Antisense
AACTCGTCATATAGTATTCTCTACT 436 141 535 Antisense
ATTCTCTACTCGGCACAGATTGACG 699 7 550 Antisense
GGAGGGCTAACAAAGTATCATCTGG 375 517 619 Antisense
GTTCCTGCTGGTTTTACTGGCAATC 264 441 650 Antisense
Sequence Source Affymetrix Proprietary Database