[Home] | [Total List]

[179941_at]

Description T07D3.5 /REP_DB=WormBase Gene ID /WP=CE13363 /TR=O16722 /GB=AAB66185.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 32      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 101.5
(3)
A 		97.9
(2.5)
A 		62
(-2.7)
A 		60.2
(-3)
A 		41
B 39.6
(-2.6)
A 		35.7
(-3)
A 		40.1
(-2.6)
A 		97.2
(3)
A 		62
C 61.1
(-3)
A 		109.7
(-0.2)
A 		166.1
(3)
A 		123.8
(0.6)
A 		105
avr 67.4
(-3) 		81.1
(0.1) 		89.4
(2) 		93.7
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 125.4
(3)
A 		41.5
(-2)
A 		72.3
(-0.1)
A 		24
(-3)
A 		41.2
(-2)
A 		30.6
(-2.6)
A 		101
B 174.5
(3)
A 		30.1
(-3)
A 		66.4
(-1.5)
A 		72
(-1.3)
A 		81.2
(-0.9)
A 		61.9
(-1.7)
A 		144
C 131.4
(2.2)
A 		147.5
(3)
A 		28.1
(-2.8)
A 		96.5
(0.5)
A 		67
(-0.9)
A 		24.7
(-3)
A 		123
avr 143.8
(3) 		73
(-1.1) 		55.6
(-2.1) 		64.2
(-1.6) 		63.1
(-1.6) 		39.1
(-3) 		105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 37
(3)
A 		21.2
(-0.4)
A 		16.2
(-1.4)
A 		8.8
(-3)
A 		28
B 12.6
(-1.1)
A 		8.8
(-3)
A 		9.3
(-2.7)
A 		20.7
(3)
A 		12
C 20.2
(-3)
A 		31.6
(-1.2)
A 		57.9
(3)
A 		20.9
(-2.9)
A 		38
avr 23.3
(0.5) 		20.5
(-1) 		27.8
(3) 		16.8
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 23.1
(3)
A 		14.8
(0.1)
A 		15.8
(0.4)
A 		6.1
(-3)
A 		12.4
(-0.8)
A 		7.4
(-2.5)
A 		17
B 60.7
(3)
A 		10
(-3)
A 		16.1
(-2.3)
A 		19.1
(-1.9)
A 		33
(-0.3)
A 		23.1
(-1.4)
A 		51
C 48.7
(3)
A 		45
(2.5)
A 		7.2
(-3)
A 		19.4
(-1.2)
A 		21.7
(-0.9)
A 		8.3
(-2.8)
A 		42
avr 44.2
(3) 		23.3
(-1) 		13
(-3) 		14.9
(-2.6) 		22.4
(-1.2) 		12.9
(-3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179941_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4955
Sequence Type Exemplar sequence
Representative Public ID T07D3.5 NCBI
Target Description T07D3.5 /REP_DB=WormBase Gene ID /WP=CE13363 /TR=O16722 /GB=AAB66185.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061438(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061438 NCBI Caenorhabditis elegans T07D3.5 (T07D3.5) mRNA, complete cds. 11/11 None
T07D3.5 ENSEMBL cdna:known chromosome:CEL140:II:885490:887036:1 gene:T07D3.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029319 2/11 Cross Hyb Matching Probes None
GENEFINDER00000029321 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:885488-887035(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T07D3.5
Entrez Gene 188223 Entrez gene
SwissProt O16722 EMBL-EBI
WormBase CE13363 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66185 Hypothetical protein T07D3.5 [Caenorhabditis elegans] ref|NP_493839.1| T07D3.5 [Caenorhabditis elegans] 1.0E-115
blast CAE69205 Hypothetical protein CBG15245 [Caenorhabditis briggsae] 1.0E-46
blast AAA64323 Hypothetical protein W02B3.4 [Caenorhabditis elegans] ref|NP_497236.2| W02B3.4 [Caenorhabditis elegans] sp|Q09341|YR24_CAEEL Hypothetical protein W02B3.4 in chromosome III 5.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR009644 EMBL-EBI Fukutin-related 8.1E-21
Sequence
Target Sequence 
>C. ELEGANS:179941_AT
gtatttggaccgccattcgtctaaattcgagtggaattcctcgcacaataatgtgaaaga
gaatgggaaatttaaaaaggaacagatgaagacggtttataaaattccccctccagtcat
cattgtcggacgacccccaggacatattcctcctacggaagtcattccaagaagtggagg
tgtagttggaatgtcgaacctaggcgaaggatctacagctcctccatatctcaagttccc
accagttgttggaccaccaatctccccacctccaaggcattttcctcccccggtaatcat
tggaggaggcgaagttgtgattggaaagccatacccaggcgacgcatctacaccacctcc
atatcccaaattcccaccagttgttggaagaaatattcctctcccggtaaactttccaag
aggcgaagttgtgattggaaagggaagcctaggggaagcatctacacctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTTGGACCGCCATTCGTCTAAA 668 447 297 Antisense
GTGGAATTCCTCGCACAATAATGTG 560 491 327 Antisense
CCCTCCAGTCATCATTGTCGGACGA 126 261 405 Antisense
AGGACATATTCCTCCTACGGAAGTC 483 53 435 Antisense
TAGGCGAAGGATCTACAGCTCCTCC 437 651 497 Antisense
TCTCAAGTTCCCACCAGTTGTTGGA 687 607 525 Antisense
ACCAGTTGTTGGACCACCAATCTCC 164 87 537 Antisense
TTCCTCCCCCGGTAATCATTGGAGG 437 697 578 Antisense
TTGGAAAGCCATACCCAGGCGACGC 150 709 617 Antisense
ATCCCAAATTCCCACCAGTTGTTGG 93 37 659 Antisense
AGCCTAGGGGAAGCATCTACACCTC 669 81 742 Antisense
Sequence Source Affymetrix Proprietary Database