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[179940_at]

Description C04G6.7 /REP_DB=WormBase Gene ID /WP=CE27652 /TR=Q17641 /GB=AAK68161.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 50      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 327
1 2 3 4 range
A 15.9
(-2.9)
A 		335.1
(3)
M 		256.9
(1.6)
P 		8
(-3)
A 		327
B 33.7
(-3)
A 		284.1
(3)
M 		173
(0.3)
M 		43
(-2.8)
A 		250
C 19.5
(-2.8)
A 		254.2
(3)
A 		214.9
(2)
P 		11.1
(-3)
A 		243
avr 23
(-2.9) 		291.1
(3) 		214.9
(1.3) 		20.7
(-3) 		270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 213
1 2 3 4 5 6 range
A 108.1
(-3)
A 		200.5
(3)
M 		149.3
(-0.3)
A 		110.8
(-2.8)
A 		140.8
(-0.9)
A 		186.8
(2.1)
A 		92
B 68.2
(-3)
A 		188.7
(1.7)
A 		103.6
(-1.6)
A 		124.4
(-0.8)
A 		167.6
(0.9)
A 		220.9
(3)
A 		153
C 92.4
(-3)
A 		281.4
(3)
A 		140.8
(-1.5)
A 		174.9
(-0.4)
A 		165.9
(-0.7)
A 		195.8
(0.3)
M 		189
avr 89.6
(-3) 		223.5
(3) 		131.2
(-1.1) 		136.7
(-0.9) 		158.1
(0.1) 		201.2
(2) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 5.8
(-2.6)
A 		72.7
(3)
M 		67.2
(2.5)
P 		1.2
(-3)
A 		72
B 10.8
(-2.8)
A 		70.2
(3)
M 		40.1
(0)
M 		9.2
(-3)
A 		61
C 6.4
(-2.6)
A 		73.1
(2.9)
A 		74.9
(3)
P 		1.9
(-3)
A 		73
avr 7.7
(-2.7) 		72
(3) 		60.7
(2) 		4.1
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 19.9
(-3)
A 		71.3
(3)
M 		32.5
(-1.5)
A 		28.1
(-2)
A 		42.5
(-0.4)
A 		45.5
(-0)
A 		51
B 23.7
(-3)
A 		62.8
(1)
A 		25.2
(-2.8)
A 		32.9
(-2.1)
A 		68.1
(1.5)
A 		82.4
(3)
A 		59
C 34.3
(-3)
A 		85.9
(3)
A 		35.8
(-2.8)
A 		35.2
(-2.9)
A 		53.7
(-0.7)
A 		65.5
(0.6)
M 		52
avr 26
(-3) 		73.3
(3) 		31.2
(-2.3) 		32.1
(-2.2) 		54.8
(0.7) 		64.5
(1.9) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179940_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4939
Sequence Type Exemplar sequence
Representative Public ID C04G6.7 NCBI
Target Description C04G6.7 /REP_DB=WormBase Gene ID /WP=CE27652 /TR=Q17641 /GB=AAK68161.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062544, NM_062542
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C04G6.7 ENSEMBL cdna:known chromosome:CEL140:II:5100394:5101765:-1 gene:C04G6.7 None
C04G6.11 ENSEMBL cdna:known chromosome:CEL140:II:5103323:5103816:-1 gene:C04G6.11 None
GENEFINDER00000008321 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5101112:5101765:-1 None
NM_062542 NCBI Caenorhabditis elegans C04G6.7 (C04G6.7) mRNA, complete cds. None
NM_062544 NCBI Caenorhabditis elegans C04G6.11 (C04G6.11) mRNA, complete cds. None
SNAP00000008313 ENSEMBL cdna:SNAP chromosome:CEL140:II:5101112:5101765:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008312 3/11 Cross Hyb Matching Probes None
GENEFINDER00000008319 3/11 Cross Hyb Matching Probes None
SNAP00000025610 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5100391-5103814(-) 73.68 100.0
Public Domain and Genome References
Gene Title

Ensembl C04G6.7
C04G6.11
Entrez Gene 173878 Entrez gene
182239 Entrez gene
SwissProt Q95QY0 EMBL-EBI
Q17641 EMBL-EBI
WormBase CE27650 Wormbase
CE27652 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6952 defense response inferred from electronic annotation QuickGO AmiGO
9613 response to pest, pathogen or parasite inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
5506 iron ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68159 Hypothetical protein C04G6.11 [Caenorhabditis elegans] ref|NP_494945.1| C04G6.11 [Caenorhabditis elegans] 2.0E-48
blast T29598 hypothetical protein C04G6.7 - Caenorhabditis elegans 2.0E-48
blast AAK68161 Hypothetical protein C04G6.7 [Caenorhabditis elegans] ref|NP_494943.1| C04G6.7 [Caenorhabditis elegans] 8.0E-30
blast T29598 hypothetical protein C04G6.7 - Caenorhabditis elegans 7.0E-29
blast CAE59042 Hypothetical protein CBG02323 [Caenorhabditis briggsae] 2.0E-9
blast T34004 hypothetical protein W03G1.9 - Caenorhabditis elegans 5.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494945.1 1 103-125
C04G6.11 1 103-125
Sequence
Target Sequence 
>C. ELEGANS:179940_AT
gtcctcaaaagaagtggcgttagtaacatcatcaactgatgcttcaactacttcatcatc
tgaaacatcaattgatacattaggatcatccagagttaaaagacaaggaggatgtggttg
ctgtgggtgcggatgcggatgctgcggatgtggaggaggaggtggaggatgcggatgctg
ctgttatgctgctgctgttgccgtcgttgctgcacatgttgccgtacttgctgttgtaca
agatgttgtacctgctgccgtccatgttgttgtggatgtggatgtggatgttgtggatgc
ggaggtggaggacgtaaacgtcgttctcttcagaatcttcgtatcgatgaagccaacaga
gccctcggaatcaagagacgaccagccaagggaggagacaagtgctaatttttttaattc
gggtttagattttctgaaatcgaccgcgatggctcgtccgaaacctttgattgaggagaa
agcaaagaagcaagaaaatgacgagaaaaagaatagagaggcgagcagaaattgttgtga
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCTCAAAAGAAGTGGCGTTAGTA 423 37 420 Antisense
GGCGTTAGTAACATCATCAACTGAT 581 541 435 Antisense
ATCAACTGATGCTTCAACTACTTCA 382 27 450 Antisense
CTGATGCTTCAACTACTTCATCATC 84 239 455 Antisense
GGAGGATGCGGATGCTGCTGTTATG 143 517 583 Antisense
GGATGCGGATGCTGCTGTTATGCTG 631 513 586 Antisense
GGGAGGAGACAAGTGCTAATTTTTT 638 493 809 Antisense
CTGAAATCGACCGCGATGGCTCGTC 663 237 853 Antisense
ATGGCTCGTCCGAAACCTTTGATTG 35 39 868 Antisense
GCTCGTCCGAAACCTTTGATTGAGG 145 299 871 Antisense
AGAGGCGAGCAGAAATTGTTGTGAC 242 65 936 Antisense
Sequence Source Affymetrix Proprietary Database