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[179938_at]

Description C04C3.6 /REP_DB=WormBase Gene ID /WP=CE16812 /TR=O44453 /GB=AAB92021.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 21      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 117.7
(-0.3)
P 		96.3
(-3)
A 		99.7
(-2.6)
A 		143.8
(3)
A 		48
B 136.2
(2.5)
P 		94.5
(-0.3)
A 		53.7
(-3)
A 		144.2
(3)
P 		91
C 113.7
(2)
P 		80.2
(-1)
A 		57.3
(-3)
A 		125.6
(3)
A 		68
avr 122.5
(1.6) 		90.3
(-1.2) 		70.2
(-3) 		137.9
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 98.9
(3)
A 		39.6
(-3)
A 		96
(2.7)
A 		65.2
(-0.4)
A 		42.6
(-2.7)
A 		50.2
(-1.9)
A 		59
B 71.4
(1.4)
A 		56.6
(0)
A 		25.4
(-3)
A 		87.7
(3)
A 		58.7
(0.2)
A 		77.8
(2)
M 		62
C 106
(3)
A 		95.6
(1.9)
A 		73.4
(-0.4)
A 		54.9
(-2.4)
A 		54.6
(-2.4)
A 		49.3
(-3)
A 		57
avr 92.1
(3) 		63.9
(-1.2) 		64.9
(-1.1) 		69.3
(-0.4) 		52
(-3) 		59.1
(-1.9) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 42.9
(3)
P 		20.9
(-3)
A 		26.1
(-1.6)
A 		21
(-3)
A 		22
B 43.4
(3)
P 		23.3
(-0.9)
A 		12.4
(-3)
A 		30.7
(0.5)
P 		31
C 37.6
(3)
P 		23.1
(-1.9)
A 		20
(-3)
A 		21.2
(-2.6)
A 		18
avr 41.3
(3) 		22.4
(-2.2) 		19.5
(-3) 		24.3
(-1.7) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 18.2
(1.1)
A 		14.1
(-1.7)
A 		20.9
(3)
A 		16.5
(-0)
A 		12.9
(-2.5)
A 		12.2
(-3)
A 		9
B 24.8
(1.9)
A 		18.9
(0.3)
A 		6.2
(-3)
A 		23.2
(1.5)
A 		23.8
(1.6)
A 		29
(3)
M 		23
C 39.3
(3)
A 		29.2
(0.9)
A 		18.7
(-1.4)
A 		11
(-3)
A 		17.7
(-1.6)
A 		16.5
(-1.8)
A 		28
avr 27.4
(3) 		20.7
(-0.3) 		15.3
(-3) 		16.9
(-2.2) 		18.1
(-1.6) 		19.2
(-1.1) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179938_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11238
Sequence Type Exemplar sequence
Representative Public ID C04C3.6 NCBI
Target Description C04C3.6 /REP_DB=WormBase Gene ID /WP=CE16812 /TR=O44453 /GB=AAB92021.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067941(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067941 NCBI Caenorhabditis elegans C04C3.6 (C04C3.6) mRNA, complete cds. 11/11 None
SNAP00000029933 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3419716:3422604:-1 11/11 None
GENEFINDER00000029941 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3419716:3422604:-1 11/11 None
C04C3.6 ENSEMBL cdna:known chromosome:CEL140:IV:3419810:3422604:-1 gene:C04C3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3419815-3422610(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04C3.6
Entrez Gene 182197 Entrez gene
SwissProt O44453 EMBL-EBI
WormBase CE16812 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB92021 Hypothetical protein C04C3.6 [Caenorhabditis elegans] ref|NP_500342.1| C04C3.6 [Caenorhabditis elegans] 0.0
blast CAE73579 Hypothetical protein CBG21053 [Caenorhabditis briggsae] 1.0E-117
blast CAE75408 Hypothetical protein CBG23398 [Caenorhabditis briggsae] 2.0E-67
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500342.1 8 28-50,60-82,89-107,112-134,147-169,189-211,272-289,313-335
C04C3.6 8 28-50,60-82,89-107,112-134,147-169,189-211,272-289,313-335
SNAP00000029933 8 28-50,60-82,89-107,112-134,147-169,189-211,272-289,313-335
GENEFINDER00000029941 8 28-50,60-82,89-107,112-134,147-169,189-211,272-289,313-335
Sequence
Target Sequence 
>C. ELEGANS:179938_AT
gcgtattattcgcattctccgtcatatcccagctatggaccccaatccttatcacggagt
tatcagtaggtgcagacgcctcatcaggcacctactgcgccgaggacccgagaatcttcg
gcgagatcacgctccgatatctgatatttttcgagtgcttcatgacatttttcctgccgt
tagtgctcacagttatcacggatttttcggtgttgattatgcgaaatccgtgtacttcga
aaaatgcgtttactctgatttcggcggatgagattgtgcaccatgagagtacagatgaga
agagtccgctgaaaattgtgcacaaatcgaagatcatgctagatattcgtcggagaaacg
acgcgatccgccgatgtttacttttggctaccgtaacccttttactcaatcttccaaatt
attctctacaacttattgatgaattctatcatttccgggagagcgaggatttggcagatc
ggcggaggtttgtgagggctgacgcaattgtctacataatatacctacttcaattcccaa
ccgttccattgtatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTATTATTCGCATTCTCCGTCAT 709 291 452 Antisense
TCAGTAGGTGCAGACGCCTCATCAG 378 619 514 Antisense
GAGAATCTTCGGCGAGATCACGCTC 497 391 561 Antisense
AGTGCTTCATGACATTTTTCCTGCC 111 61 605 Antisense
TCCTGCCGTTAGTGCTCACAGTTAT 343 591 623 Antisense
ATGCGTTTACTCTGATTTCGGCGGA 705 39 695 Antisense
GATCCGCCGATGTTTACTTTTGGCT 353 415 816 Antisense
TCGGCGGAGGTTTGTGAGGGCTGAC 189 607 930 Antisense
GAGGGCTGACGCAATTGTCTACATA 593 401 945 Antisense
TAATATACCTACTTCAATTCCCAAC 496 633 968 Antisense
AATTCCCAACCGTTCCATTGTATAT 487 171 983 Antisense
Sequence Source Affymetrix Proprietary Database