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[179937_s_at]

Description F54E2.3 /REP_DB=WormBase Gene ID /WP=CE25002 /TR=Q9TXK4 /GB=AAC78203.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 18      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 50      6grp_total > 18      4grp_total > 46      6grp_cgc > 02      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 515
1 2 3 4 range
A 713
(3)
P 		359.7
(-1.3)
P 		281.6
(-2.3)
P 		221.9
(-3)
P 		491
B 660.2
(3)
P 		282.5
(-1.9)
P 		220.3
(-2.7)
P 		198.4
(-3)
P 		462
C 554.8
(3)
P 		488.5
(1.9)
P 		267.6
(-1.9)
P 		206.5
(-3)
P 		348
avr 642.7
(3) 		376.9
(-0.7) 		256.5
(-2.3) 		208.9
(-3) 		434

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 702
1 2 3 4 5 6 range
A 606
(2.9)
P 		611.4
(3)
P 		270.2
(-3)
P 		487
(0.8)
P 		555.7
(2)
P 		551.5
(1.9)
P 		341
B 744.4
(3)
P 		489.8
(-0.6)
P 		320.1
(-3)
P 		514.9
(-0.2)
P 		409.2
(-1.7)
P 		356.4
(-2.5)
P 		424
C 963.4
(3)
P 		487.9
(-1.1)
P 		590.7
(-0.2)
P 		429.7
(-1.6)
P 		681.2
(0.6)
P 		261.3
(-3)
P 		702
avr 771.3
(3) 		529.7
(-0.8) 		393.7
(-2.9) 		477.2
(-1.6) 		548.7
(-0.5) 		389.7
(-3) 		382
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 259.6
(3)
P 		78.1
(-1.8)
P 		73.6
(-1.9)
P 		32.5
(-3)
P 		227
B 210.5
(3)
P 		69.8
(-2)
P 		51.1
(-2.7)
P 		42.3
(-3)
P 		168
C 183.7
(3)
P 		140.4
(1.3)
P 		93.3
(-0.6)
P 		34.8
(-3)
P 		149
avr 217.9
(3) 		96.1
(-1) 		72.7
(-1.8) 		36.5
(-3) 		181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 298
1 2 3 4 5 6 range
A 111.7
(-1)
P 		217.5
(3)
P 		58.8
(-3)
P 		123.5
(-0.6)
P 		167.7
(1.1)
P 		134.3
(-0.1)
P 		159
B 259
(3)
P 		163
(-0.2)
P 		77.7
(-3)
P 		136.4
(-1.1)
P 		166.3
(-0.1)
P 		132.9
(-1.2)
P 		181
C 357.1
(3)
P 		148.9
(-1.6)
P 		150.3
(-1.6)
P 		86.4
(-3)
P 		220.4
(-0)
P 		87.5
(-3)
P 		271
avr 242.6
(3) 		176.5
(0.3) 		95.6
(-3) 		115.4
(-2.2) 		184.8
(0.6) 		118.2
(-2.1) 		147
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179937_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15283
Sequence Type Exemplar sequence
Representative Public ID F54E2.3 NCBI
Target Description F54E2.3 /REP_DB=WormBase Gene ID /WP=CE25002 /TR=Q9TXK4 /GB=AAC78203.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071357(11), NM_001028798(11), NM_001028799(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071357 NCBI Caenorhabditis elegans KETtiN (Drosophila actin-binding) homolog family member (ketn-1) (ketn-1) mRNA, complete cds. 11/11 A 
NM_001028798 NCBI Caenorhabditis elegans KETtiN (Drosophila actin-binding) homolog family member (ketn-1) (ketn-1) mRNA, complete cds. 11/11 None
NM_001028799 NCBI Caenorhabditis elegans KETtiN (Drosophila actin-binding) homolog family member (ketn-1) (ketn-1) mRNA, complete cds. 11/11 None
SNAP00000004053 ENSEMBL cdna:SNAP chromosome:CEL140:V:2782663:2800854:-1 11/11 None
GENEFINDER00000004060 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2782036:2795920:-1 11/11 None
F54E2.3a ENSEMBL cdna:known chromosome:CEL140:V:2781527:2800854:-1 gene:F54E2.3 11/11 A 
F54E2.3b ENSEMBL cdna:known chromosome:CEL140:V:2781819:2799640:-1 gene:F54E2.3 11/11 A 
F54E2.3c ENSEMBL cdna:known chromosome:CEL140:V:2782405:2800854:-1 gene:F54E2.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028800 3/11 Cross Hyb Matching Probes None
F54E2.3d 3/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178740 4 3 NM_001028798 174633_at (11), 179937_s_at (11)
NM_001028799 179937_s_at (11)
NM_001028800 174633_at (11)
NM_071357 174633_at (11), 179937_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2782662-2807687(-) 98.9 100.0
Public Domain and Genome References
Ensembl F54E2.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78200 Kettin (drosophila actin-binding) homolog protein 1, isoform a [Caenorhabditis elegans] ref|NP_503758.3| KETtiN (Drosophila actin-binding) homolog family member (ketn-1) [Caenorhabditis elegans] 0.0
blast AAM45363 Kettin (drosophila actin-binding) homolog protein 1, isoform c [Caenorhabditis elegans] ref|NP_001023970.1| KETtiN (Drosophila actin-binding) homolog family member (ketn-1) [Caenorhabditis elegans] 0.0
blast AAM45364 Kettin (drosophila actin-binding) homolog protein 1, isoform d [Caenorhabditis elegans] ref|NP_001023971.1| KETtiN (Drosophila actin-binding) homolog family member (ketn-1) [Caenorhabditis elegans] 0.0
blast AAK82895 Kettin (drosophila actin-binding) homolog protein 1, isoform b [Caenorhabditis elegans] ref|NP_001023969.1| KETtiN (Drosophila actin-binding) homolog family member (ketn-1) [Caenorhabditis elegans] 0.0
blast BAA90302.2 kettin [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 13.0
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 1.8E-5
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 4.7E-6
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 4.9E-5
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 0.016
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 2.5E-10
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 4.6E-8
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 2.4E-4
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 2.0E-13
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 5.3E-11
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 2.0E-12
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 5.9E-15
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 3.8E-9
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 4.3E-8
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 4.7E-7
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 0.0018
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 0.32
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.2
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.7E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.3E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.59
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.3E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.7E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.8E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.095
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.016
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.045
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.027
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.8E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.2
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.3E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.5E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.2E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0070
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.031
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.021
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0013
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.7E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.0
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0019
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 13.0
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 1.8E-5
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 4.7E-6
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 4.9E-5
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 0.016
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 2.5E-10
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 4.6E-8
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 2.4E-4
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 2.0E-13
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 5.3E-11
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 2.0E-12
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 5.9E-15
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 3.8E-9
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 4.3E-8
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 4.7E-7
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 0.0018
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 0.32
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0029
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.7E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.3E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.59
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.3E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.7E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.8E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.095
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.016
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.045
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.027
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.8E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.2
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.3E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.5E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.2E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0070
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.031
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.021
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0013
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.7E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.0
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0019
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0013
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.7E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.0
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0019
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 13.0
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 1.8E-5
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 4.7E-6
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 4.9E-5
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 0.016
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 2.5E-10
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 4.6E-8
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 2.4E-4
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 2.0E-13
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 5.3E-11
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 2.0E-12
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 5.9E-15
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 3.8E-9
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 4.3E-8
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 4.7E-7
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 0.0018
Pfam IPR010939 EMBL-EBI Protein of unknown function DUF1136 0.32
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.0E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0018
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0042
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.2
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.7E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.3E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.59
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.3E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.7E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.8E-8
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.095
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.016
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.045
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.027
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.8E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.2
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.3E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.5E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.2E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0070
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.031
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.021
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0013
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.7E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.0
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0019
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0013
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.7E-4