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[179936_at]

Description C37C3.1 /REP_DB=WormBase Gene ID /WP=CE06926 /TR=Q22919 /GB=AAC25858.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 67      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 91      6grp_total > 68      4grp_total > 28      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 209.2
(0.5)
P 		214.3
(0.8)
P 		140.6
(-3)
P 		257.8
(3)
P 		117
B 230.6
(2.3)
P 		204
(0.2)
P 		163.1
(-3)
P 		239.2
(3)
P 		76
C 207.3
(0.6)
P 		190
(-0.4)
P 		141.3
(-3)
P 		251.9
(3)
P 		111
avr 215.7
(1) 		202.8
(0.2) 		148.3
(-3) 		249.6
(3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 271.6
(-0.1)
P 		214.3
(-2.1)
P 		188.4
(-3)
P 		217.3
(-2)
P 		213.4
(-2.1)
P 		361.5
(3)
P 		173
B 211.7
(-1.4)
P 		206.6
(-1.7)
P 		186
(-2.7)
P 		220.8
(-1)
P 		179.9
(-3)
P 		301.9
(3)
P 		122
C 193.6
(-3)
P 		224.9
(-1.4)
P 		206.8
(-2.3)
P 		232.7
(-1)
P 		214
(-2)
P 		312.7
(3)
P 		119
avr 225.6
(-1.5) 		215.3
(-2) 		193.7
(-3) 		223.6
(-1.6) 		202.4
(-2.6) 		325.4
(3) 		132
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 76.2
(3)
P 		46.5
(-1.5)
P 		36.7
(-3)
P 		37.7
(-2.8)
P 		40
B 73.6
(3)
P 		50.4
(-0.9)
P 		37.8
(-3)
P 		51
(-0.8)
P 		36
C 68.6
(3)
P 		54.6
(-0.2)
P 		49.3
(-1.4)
P 		42.5
(-3)
P 		26
avr 72.8
(3) 		50.5
(-1.2) 		41.3
(-3) 		43.7
(-2.5) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 50.1
(-1.8)
P 		76.2
(1.5)
P 		41
(-3)
P 		55.1
(-1.2)
P 		64.4
(-0)
P 		88
(3)
P 		47
B 73.7
(-0.5)
P 		68.8
(-0.9)
P 		45.2
(-3)
P 		58.5
(-1.8)
P 		73.1
(-0.5)
P 		112.6
(3)
P 		67
C 71.8
(-0.4)
P 		68.6
(-0.7)
P 		52.6
(-2.4)
P 		46.8
(-3)
P 		69.2
(-0.7)
P 		104.7
(3)
P 		58
avr 65.2
(-1) 		71.2
(-0.3) 		46.3
(-3) 		53.5
(-2.2) 		68.9
(-0.6) 		101.8
(3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179936_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12519
Sequence Type Exemplar sequence
Representative Public ID C37C3.1 NCBI
Target Description C37C3.1 /REP_DB=WormBase Gene ID /WP=CE06926 /TR=Q22919 /GB=AAC25858.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072624(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072624 NCBI Caenorhabditis elegans C37C3.1 (C37C3.1) mRNA, complete cds. 11/11 None
SNAP00000006082 ENSEMBL cdna:SNAP chromosome:CEL140:V:7860582:7862314:1 11/11 None
C37C3.1 ENSEMBL cdna:known chromosome:CEL140:V:7860555:7862435:1 gene:C37C3.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000006095 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7860555-7862315(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C37C3.1
Entrez Gene 179166 Entrez gene
SwissProt Q22919 EMBL-EBI
WormBase CE06926 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC25858 Hypothetical protein C37C3.1 [Caenorhabditis elegans] ref|NP_505025.1| C37C3.1 [Caenorhabditis elegans] 1.0E-166
blast AAC25858 Hypothetical protein C37C3.1 [Caenorhabditis elegans] ref|NP_505025.1| C37C3.1 [Caenorhabditis elegans] 1.0E-126
blast CAE73165 Hypothetical protein CBG20561 [Caenorhabditis briggsae] 9.0E-89
blast CAE73165 Hypothetical protein CBG20561 [Caenorhabditis briggsae] 7.0E-60
blast AAC17794 Hypothetical protein T24A6.7 [Caenorhabditis elegans] ref|NP_503984.1| T24A6.7 [Caenorhabditis elegans] 2.0E-25
blast AAC17794 Hypothetical protein T24A6.7 [Caenorhabditis elegans] ref|NP_503984.1| T24A6.7 [Caenorhabditis elegans] 8.0E-16
Sequence
Target Sequence 
>C. ELEGANS:179936_AT
caaccatcgctgcctgtaataatcgatttccctagatcatctccacttcgagcagctgaa
atatcacgtaggaagagcacatctcattcgacaagcttgagtaaaaggcggtacctcagg
agcagatcgagaagtctgtccaaaagcccggctcgaagacgctccagacatctttcccga
agtggatcccgtacaccagctcaacggcattccagaagatccgaaagtacatctcgaaga
cgttccggacggcactctagaagtcgatctagaagcccaccacgaaaacgtccggtacgc
cgatcaagaagcagatccaggagcaggacaccaaaccgaaattggacaagagcacggagc
agaacaagaagtcaggctaaaagtagcagcactttaacctggccactgagcccatcgaga
agca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACCATCGCTGCCTGTAATAATCG 220 187 796 Antisense
TAATCGATTTCCCTAGATCATCTCC 650 635 815 Antisense
TCATCTCCACTTCGAGCAGCTGAAA 190 621 832 Antisense
AAGGCGGTACCTCAGGAGCAGATCG 537 161 900 Antisense
CGAGAAGTCTGTCCAAAAGCCCGGC 271 251 923 Antisense
CTCGAAGACGCTCCAGACATCTTTC 158 231 947 Antisense
ACATCTTTCCCGAAGTGGATCCCGT 119 107 963 Antisense
ACATCTCGAAGACGTTCCGGACGGC 200 107 1024 Antisense
AACGTCCGGTACGCCGATCAAGAAG 485 139 1082 Antisense
AGTAGCAGCACTTTAACCTGGCCAC 23 63 1177 Antisense
TGGCCACTGAGCCCATCGAGAAGCA 195 545 1195 Antisense
Sequence Source Affymetrix Proprietary Database