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[179934_s_at]

Description C27D9.1 /REP_DB=WormBase Gene ID /WP=CE06891 /TR=Q18255 /GB=AAA93430.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 50      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 10
(-2.4)
A 		47.7
(3)
A 		29.8
(0.4)
A 		6
(-3)
A 		42
B 36.3
(0.2)
A 		67.2
(3)
A 		26
(-0.8)
A 		1.8
(-3)
A 		65
C 2.4
(-3)
A 		35.5
(2.5)
A 		38.6
(3)
A 		23.3
(0.5)
A 		36
avr 16.2
(-2.1) 		50.1
(3) 		31.5
(0.2) 		10.4
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 29.6
(-2)
A 		2.3
(-3)
A 		23.3
(-2.2)
A 		62.6
(-0.8)
A 		92.6
(0.3)
P 		164.8
(3)
P 		163
B 35.4
(-1.8)
A 		2.9
(-3)
A 		1.5
(-3)
A 		16
(-2.5)
A 		118.8
(1)
P 		177.5
(3)
P 		176
C 34.9
(-2.5)
A 		43.1
(-2.1)
A 		23.5
(-3)
A 		84.9
(-0.2)
A 		84.8
(-0.2)
P 		156.2
(3)
P 		133
avr 33.3
(-2.3) 		16.1
(-3) 		16.1
(-3) 		54.5
(-1.5) 		98.7
(0.3) 		166.2
(3) 		150
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 3.6
(-1.3)
A 		10.4
(3)
A 		7.8
(1.4)
A 		0.9
(-3)
A 		10
B 11.6
(1.1)
A 		16.6
(3)
A 		6
(-0.9)
A 		0.4
(-3)
A 		16
C 0.8
(-3)
A 		10.2
(1.4)
A 		13.5
(3)
A 		3.9
(-1.5)
A 		13
avr 5.3
(-1) 		12.4
(3) 		9.1
(1.1) 		1.7
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 5.5
(-2.3)
A 		0.8
(-3)
A 		5.1
(-2.3)
A 		15.9
(-0.7)
A 		27.9
(1.1)
P 		40.1
(3)
P 		39
B 12.3
(-1.9)
A 		1
(-2.9)
A 		0.4
(-3)
A 		4.2
(-2.7)
A 		48.3
(1.4)
P 		66.2
(3)
P 		66
C 12.9
(-2.1)
A 		13.1
(-2.1)
A 		6
(-3)
A 		17.1
(-1.6)
A 		27.4
(-0.2)
P 		52.3
(3)
P 		46
avr 10.2
(-2.2) 		5
(-2.9) 		3.8
(-3) 		12.4
(-1.9) 		34.5
(0.8) 		52.9
(3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179934_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5350
Sequence Type Exemplar sequence
Representative Public ID C27D9.1 NCBI
Target Description C27D9.1 /REP_DB=WormBase Gene ID /WP=CE06891 /TR=Q18255 /GB=AAA93430.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062450(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062450 NCBI Caenorhabditis elegans C27D9.1 (C27D9.1) mRNA, complete cds. 11/11 None
SNAP00000035796 ENSEMBL cdna:SNAP chromosome:CEL140:II:4753442:4755262:1 11/11 None
GENEFINDER00000035799 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4753442:4755262:1 11/11 None
C27D9.1 ENSEMBL cdna:known chromosome:CEL140:II:4753442:4755511:1 gene:C27D9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4753440-4755261(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C27D9.1
Entrez Gene 173822 Entrez gene
SwissProt Q18255 EMBL-EBI
WormBase CE06891 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA93430 Hypothetical protein C27D9.1 [Caenorhabditis elegans] ref|NP_494851.1| C27D9.1 [Caenorhabditis elegans] 0.0
blast CAE73215 Hypothetical protein CBG20621 [Caenorhabditis briggsae] 0.0
blast AAC67451 Hypothetical protein F53C3.11 [Caenorhabditis elegans] ref|NP_494692.1| F53C3.11 [Caenorhabditis elegans] 6.0E-35
blast AAC67451 Hypothetical protein F53C3.11 [Caenorhabditis elegans] ref|NP_494692.1| F53C3.11 [Caenorhabditis elegans] 3.0E-34
Sequence
Target Sequence 
>C. ELEGANS:179934_S_AT
acgagcgggatcacttcgaacgcgtcgaagtggacatgcaggccggcgatgagattgcca
cgtgttttgcggaatcgatgggaatgttcgagcagagtgggatgtcggcaactgcatttc
agaacgtttgcgccaacgtcaagcgtattttcccaacgcaagatatgtacctcattctgc
cgactgaactggctcacgtggcttctgtcgagtttgacggtttctgtaaggcacttctgg
agtttgcgtggaaggatgagaggactgctagacactcgagactcttcttccggctttaca
cattcggaataaccgaggagcaagtgttgaggcaaacagaaaatcaattcaaaatcaact
gccgaccagtggctgcaatgctgtccgactcatccgtccgacgctccttcctccagtggc
taccgggctccacgtcaaccttcgaccgttcactcctctccttcactgatgtctggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGAGCGGGATCACTTCGAACGCGT 513 93 935 Antisense
GCAGGCCGGCGATGAGATTGCCACG 689 309 972 Antisense
GTGGGATGTCGGCAACTGCATTTCA 382 489 1031 Antisense
GCGCCAACGTCAAGCGTATTTTCCC 238 287 1064 Antisense
GCAAGATATGTACCTCATTCTGCCG 365 319 1092 Antisense
TGCCGACTGAACTGGCTCACGTGGC 421 585 1112 Antisense
TCACGTGGCTTCTGTCGAGTTTGAC 66 625 1128 Antisense
TGACGGTTTCTGTAAGGCACTTCTG 649 569 1149 Antisense
TGCTAGACACTCGAGACTCTTCTTC 555 579 1200 Antisense
TCTTCTTCCGGCTTTACACATTCGG 349 615 1217 Antisense
TCCTCTCCTTCACTGATGTCTGGAA 334 593 1388 Antisense
Sequence Source Affymetrix Proprietary Database