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[179933_at]

Description F39E9.1 /REP_DB=WormBase Gene ID /WP=CE10098 /TR=O17116 /GB=AAB70366.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 29      6grp_total > 46      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 36.2
(-3)
P 		62.6
(3)
P 		53.9
(1)
P 		59.7
(2.3)
P 		26
B 9.8
(-3)
A 		16.6
(-2.4)
A 		33.8
(-0.8)
A 		76.4
(3)
P 		67
C 28.6
(-2.4)
A 		10.2
(-3)
A 		24.2
(-2.6)
P 		205.3
(3)
M 		195
avr 24.9
(-3) 		29.8
(-2.7) 		37.3
(-2.2) 		113.8
(3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 27
(-1.6)
A 		31.8
(-1)
A 		35.6
(-0.6)
P 		30.3
(-1.2)
A 		15.7
(-3)
A 		65
(3)
P 		49
B 37.2
(2.2)
A 		27.3
(0.5)
A 		42.3
(3)
P 		27.4
(0.6)
A 		5.7
(-3)
A 		29.2
(0.9)
P 		37
C 41.2
(3)
P 		36.4
(2.1)
A 		27.6
(0.4)
A 		40.3
(2.8)
A 		9.8
(-3)
A 		33.1
(1.5)
A 		31
avr 35.1
(1.6) 		31.8
(1) 		35.2
(1.7) 		32.7
(1.2) 		10.4
(-3) 		42.4
(3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 13.2
(2)
P 		13.6
(2.4)
P 		14.1
(3)
P 		8.7
(-3)
P 		5
B 3.1
(-3)
A 		4.1
(-2.5)
A 		7.8
(-0.9)
A 		16.3
(3)
P 		13
C 9.5
(-1.8)
A 		2.9
(-3)
A 		8.4
(-2)
P 		34.6
(3)
M 		32
avr 8.6
(-2.2) 		6.9
(-3) 		10.1
(-1.5) 		19.9
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 5
(-2.8)
A 		11.3
(0.6)
A 		7.8
(-1.3)
P 		7.7
(-1.4)
A 		4.7
(-3)
A 		15.8
(3)
P 		11
B 12.9
(3)
A 		9.1
(0.8)
A 		10.3
(1.5)
P 		7.3
(-0.2)
A 		2.3
(-3)
A 		10.9
(1.9)
P 		11
C 15.3
(3)
P 		11.1
(0.9)
A 		7
(-1.1)
A 		8.1
(-0.6)
A 		3.2
(-3)
A 		11.1
(0.9)
A 		12
avr 11.1
(2) 		10.5
(1.6) 		8.4
(0.3) 		7.7
(-0.2) 		3.4
(-3) 		12.6
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179933_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5184
Sequence Type Exemplar sequence
Representative Public ID F39E9.1 NCBI
Target Description F39E9.1 /REP_DB=WormBase Gene ID /WP=CE10098 /TR=O17116 /GB=AAB70366.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062103, NM_062104
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F39E9.1 ENSEMBL cdna:known chromosome:CEL140:II:3315879:3319525:1 gene:F39E9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062103 6/11 Cross Hyb Matching Probes None
SNAP00000020872 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3315877-3319524(+) 100.0 100.0
Public Domain and Genome References
Ensembl F39E9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast D88095 protein F39E9.1 [imported] - Caenorhabditis elegans 1.0E-126
blast AAB70366 Hypothetical protein F39E9.1 [Caenorhabditis elegans] ref|NP_494504.2| F39E9.1 [Caenorhabditis elegans] 2.0E-88
blast NP_494505 Y46D2A.2 [Caenorhabditis elegans] gb|AAF60610.3| Hypothetical protein Y46D2A.2 [Caenorhabditis elegans] 5.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.4E-7
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 4.9E-20
Sequence
Target Sequence 
>C. ELEGANS:179933_AT
aattcacatgatttccgtcagattggtgaatgtctcacaggaaaactggataaaaacgga
tttgtaaagcaatttttggttgaaacaacaatttggcgaacgcagagaaaaaataagctg
gatttgtttccaattgaaatactttttttagctgtactcacaaaacaagtttttaaaaaa
agttggattaccaaaatcttaggaattgattttctaggaccaaaatggttcaaaactgca
atattctatatttcactttcaaactgtgatcctcaaattattcgcttgaaaaatatccct
tcacctataccaaatgtggaggaaggagcaaaattgtacctagcttcaaatgatgataac
ggtctactaaagaatattcaagttcaaacggcagatccagcattctctgtctatgtcatc
aggcaagctcaaacagtgtccacgactcagccaaactccaccgtcgtaatcttgaatacc
gaacttgataatgacgcgttagtattcgaccagccgtttaagtcgtcttatgtcacaaac
atcaatcagtcccgaactccaacctatttttccattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCACATGATTTCCGTCAGATTG 56 177 112 Antisense
TACTTTTTTTAGCTGTACTCACAAA 499 643 251 Antisense
ATGGTTCAAAACTGCAATATTCTAT 105 51 336 Antisense
TGTGATCCTCAAATTATTCGCTTGA 491 555 376 Antisense
TGAAAAATATCCCTTCACCTATACC 512 571 398 Antisense
TCAAACGGCAGATCCAGCATTCTCT 355 629 495 Antisense
CATTCTCTGTCTATGTCATCAGGCA 551 215 512 Antisense
ACGCGTTAGTATTCGACCAGCCGTT 446 87 605 Antisense
GACCAGCCGTTTAAGTCGTCTTATG 460 381 619 Antisense
ACAAACATCAATCAGTCCCGAACTC 83 111 646 Antisense
CGAACTCCAACCTATTTTTCCATTG 390 251 664 Antisense
Sequence Source Affymetrix Proprietary Database