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[179931_s_at]

Description C18E3.9 /REP_DB=WormBase Gene ID /WP=CE27716 /TR=O02103 /GB=AAK68199.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_high_8_8 > 53      6grp_highest_nonorm > 94      6grp_total > 97      4grp_total > 56      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 477.1
(0.7)
P 		502.2
(3)
P 		502.6
(3)
P 		434.7
(-3)
P 		68
B 541.3
(0.1)
P 		578
(3)
P 		502.8
(-3)
P 		525.2
(-1.2)
P 		75
C 484.2
(-2.4)
P 		469.5
(-3)
M 		621.1
(3)
P 		475.9
(-2.7)
P 		152
avr 500.9
(-0.9) 		516.6
(0.6) 		542.2
(3) 		478.6
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 522
1 2 3 4 5 6 range
A 456.6
(-3)
P 		472.5
(-2.8)
P 		473.5
(-2.8)
P 		586.9
(-1.4)
P 		698.1
(0)
P 		937.8
(3)
P 		481
B 503.9
(-1.6)
P 		455.9
(-2.4)
P 		415.4
(-3)
P 		593.2
(-0.3)
P 		741.8
(2)
P 		805.2
(3)
P 		390
C 444
(-2.8)
P 		429.6
(-3)
P 		594.1
(-0.8)
P 		538.2
(-1.5)
P 		713.9
(0.8)
P 		875.1
(3)
P 		446
avr 468.2
(-2.8) 		452.7
(-3) 		494.3
(-2.4) 		572.8
(-1.3) 		717.9
(0.8) 		872.7
(3) 		420
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 173.7
(3)
P 		109
(-0.5)
P 		131.4
(0.7)
P 		63.6
(-3)
P 		110
B 172.6
(3)
P 		142.7
(0)
P 		116.5
(-2.5)
P 		111.9
(-3)
P 		61
C 160.3
(0.5)
P 		135
(-0.6)
M 		216.5
(3)
P 		80.2
(-3)
P 		136
avr 168.9
(3) 		128.9
(0.1) 		154.8
(2) 		85.2
(-3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 217
1 2 3 4 5 6 range
A 84.2
(-3)
P 		168
(0.5)
P 		103.1
(-2.2)
P 		148.9
(-0.3)
P 		210.7
(2.3)
P 		228.3
(3)
P 		144
B 175.3
(-0.8)
P 		151.8
(-1.5)
P 		100.9
(-3)
P 		157.1
(-1.3)
P 		301.4
(3)
P 		300.3
(3)
P 		201
C 164.6
(-1.2)
P 		131.1
(-2.3)
P 		151.2
(-1.6)
P 		108.2
(-3)
P 		231
(1)
P 		292.9
(3)
P 		185
avr 141.4
(-2.1) 		150.3
(-1.8) 		118.4
(-3) 		138.1
(-2.2) 		247.7
(2) 		273.8
(3) 		155
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179931_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1585
Sequence Type Exemplar sequence
Representative Public ID C18E3.9 NCBI
Target Description C18E3.9 /REP_DB=WormBase Gene ID /WP=CE27716 /TR=O02103 /GB=AAK68199.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058930(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058930 NCBI Caenorhabditis elegans C18E3.9 (C18E3.9) mRNA, complete cds. 11/11 None
GENEFINDER00000003662 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4214425:4215576:-1 11/11 None
SNAP00000003661 ENSEMBL cdna:SNAP chromosome:CEL140:I:4214650:4216041:-1 9/11 None
C18E3.9 ENSEMBL cdna:known chromosome:CEL140:I:4214364:4215732:-1 gene:C18E3.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4214424-4215478(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18E3.9
Entrez Gene 172020 Entrez gene
SwissProt O02103 EMBL-EBI
WormBase CE27716 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68199 Hypothetical protein C18E3.9 [Caenorhabditis elegans] ref|NP_491331.1| C18E3.9 [Caenorhabditis elegans] 1.0E-151
blast AAK68199 Hypothetical protein C18E3.9 [Caenorhabditis elegans] ref|NP_491331.1| C18E3.9 [Caenorhabditis elegans] 1.0E-148
blast AAK68199 Hypothetical protein C18E3.9 [Caenorhabditis elegans] ref|NP_491331.1| C18E3.9 [Caenorhabditis elegans] 2.0E-91
blast CAE66810 Hypothetical protein CBG12174 [Caenorhabditis briggsae] 4.0E-60
blast CAE66810 Hypothetical protein CBG12174 [Caenorhabditis briggsae] 3.0E-35
Sequence
Target Sequence 
>C. ELEGANS:179931_S_AT
tcacaatcaccgggtgccagtccatcgtccgatcaaatatttatagatgacagccagcca
tcaaccactaaaagacgttgggtaatatcggagcctgatgataacagcgataaacatgtt
tcatcttcggaaaatcatcaacaaagagaaaaaataatatcaccaaccgagaaaaccctg
caaaaatctacatccagcaacagcagtcctaccttaaaactctttgtgactgtaccatca
tcgtcgaatcaagaatgcattttacacaaatacgggcattgtattgccccacagatttgc
ccattcgctcatgatggagttgtgcgaaaacttgaaaaaaaaacagtcactgcaccattt
tggcagcggaaacttcccaatatatctctctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACAATCACCGGGTGCCAGTCCAT 239 627 307 Antisense
GCCAGTCCATCGTCCGATCAAATAT 688 279 322 Antisense
AGCCAGCCATCAACCACTAAAAGAC 553 83 358 Antisense
TATCACCAACCGAGAAAACCCTGCA 194 651 464 Antisense
CTACATCCAGCAACAGCAGTCCTAC 102 227 494 Antisense
GCAGTCCTACCTTAAAACTCTTTGT 655 311 509 Antisense
GACTGTACCATCATCGTCGAATCAA 692 373 534 Antisense
CATTGTATTGCCCCACAGATTTGCC 225 217 583 Antisense
GATTTGCCCATTCGCTCATGATGGA 700 427 600 Antisense
AAACAGTCACTGCACCATTTTGGCA 437 127 647 Antisense
GAAACTTCCCAATATATCTCTCTGT 66 357 675 Antisense
Sequence Source Affymetrix Proprietary Database