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[179929_at]

Description T04G9.1 /REP_DB=WormBase Gene ID /WP=CE04882 /TR=Q22173 /GB=AAA82463.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 39      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 95.7
(3)
A 		27.1
(-3)
A 		27.2
(-3)
A 		68.6
(0.6)
A 		69
B 75
(3)
M 		15.2
(-2.1)
A 		4.2
(-3)
A 		50.5
(0.9)
A 		71
C 104.5
(3)
P 		45.8
(-1.1)
A 		32.8
(-2.1)
A 		19.5
(-3)
A 		85
avr 91.7
(3) 		29.4
(-2.3) 		21.4
(-3) 		46.2
(-0.9) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 45.8
(-1)
A 		72.2
(1)
A 		99.3
(3)
A 		56.3
(-0.2)
A 		19.6
(-3)
A 		36.4
(-1.7)
A 		80
B 83.4
(2.9)
A 		84.5
(3)
A 		36.1
(-2.9)
A 		56.3
(-0.4)
A 		35.2
(-3)
A 		38.4
(-2.6)
A 		49
C 95.6
(3)
P 		82.8
(1.4)
A 		55.1
(-2)
A 		46.9
(-3)
A 		47.4
(-2.9)
A 		51.2
(-2.5)
A 		49
avr 74.9
(2.4) 		79.8
(3) 		63.5
(0.9) 		53.2
(-0.5) 		34.1
(-3) 		42
(-2) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 34.8
(3)
A 		5.9
(-3)
A 		7.1
(-2.8)
A 		10
(-2.1)
A 		29
B 23.9
(3)
M 		3.7
(-2.3)
A 		1
(-3)
A 		10.8
(-0.4)
A 		23
C 34.6
(3)
P 		13.2
(-1.1)
A 		11.4
(-1.4)
A 		3.3
(-3)
A 		31
avr 31.1
(3) 		7.6
(-2.7) 		6.5
(-3) 		8
(-2.6) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 8.4
(-2.2)
A 		25.7
(3)
A 		21.6
(1.8)
A 		14.3
(-0.5)
A 		5.9
(-3)
A 		8.9
(-2.1)
A 		20
B 29
(3)
A 		28.1
(2.7)
A 		8.8
(-3)
A 		14.9
(-1.2)
A 		14.3
(-1.4)
A 		14.3
(-1.4)
A 		20
C 35.4
(3)
P 		25.3
(0.7)
A 		14
(-1.9)
A 		9.4
(-3)
A 		15.3
(-1.6)
A 		17.2
(-1.2)
A 		26
avr 24.3
(2.1) 		26.4
(3) 		14.8
(-1.8) 		12.9
(-2.5) 		11.8
(-3) 		13.5
(-2.3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179929_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18106
Sequence Type Exemplar sequence
Representative Public ID T04G9.1 NCBI
Target Description T04G9.1 /REP_DB=WormBase Gene ID /WP=CE04882 /TR=Q22173 /GB=AAA82463.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075755(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075755 NCBI Caenorhabditis elegans T04G9.1 (T04G9.1) mRNA, complete cds. 11/11 None
SNAP00000034736 ENSEMBL cdna:SNAP chromosome:CEL140:X:788410:795299:1 11/11 None
T04G9.1 ENSEMBL cdna:known chromosome:CEL140:X:788410:796141:1 gene:T04G9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:788480-795299(+) 99.92 99.92
Public Domain and Genome References
Gene Title
Ensembl T04G9.1
Entrez Gene 3565014 Entrez gene
SwissProt Q22173 EMBL-EBI
WormBase CE04882 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_508156 T04G9.1 [Caenorhabditis elegans] gb|AAA82463.1| Hypothetical protein T04G9.1 [Caenorhabditis elegans] 0.0
blast CAE63620 Hypothetical protein CBG08113 [Caenorhabditis briggsae] 8.0E-83
blast CAE63620 Hypothetical protein CBG08113 [Caenorhabditis briggsae] 2.0E-81
Sequence
Target Sequence 
>C. ELEGANS:179929_AT
ttctggagaccagctcttagattataaacctggaagagatgacgaaaaacaactagatgt
ggagatacaaaacaagatacgactttttcgtgaacaaaagcgggctgaagcgttggagag
agatcgactaaccaatctgaaccgacttgggaggcaaactgaaacgactgaaattaaacg
aaaaaaagctccctgtgagaagactgagagtacctttgaaaatggggaaatcgattatga
caatattcaccatggtattaggatcatcgaaagtgaaagtgaagaatcatcggattccga
ttctgattctgatgaaaacgtggagcaagaaattatagatgggcaagtcatctccatgtc
acaaaaagattgtcaaaaactactcgagcagcatcgaattgcctgtgacagaattcgaga
gcccaataattttctaagagaccagaatattatgcggaacagtgagaggataaggcaatc
tgattgggagtacgagtatatgctagaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGGAGACCAGCTCTTAGATTAT 350 693 4218 Antisense
GCGGGCTGAAGCGTTGGAGAGAGAT 131 293 4317 Antisense
GATCGACTAACCAATCTGAACCGAC 631 417 4339 Antisense
CTGAACCGACTTGGGAGGCAAACTG 699 223 4354 Antisense
AAAGCTCCCTGTGAGAAGACTGAGA 514 123 4402 Antisense
TGGGCAAGTCATCTCCATGTCACAA 66 555 4557 Antisense
GATTGTCAAAAACTACTCGAGCAGC 395 435 4585 Antisense
GAGCAGCATCGAATTGCCTGTGACA 339 389 4603 Antisense
GCCTGTGACAGAATTCGAGAGCCCA 368 281 4618 Antisense
GAGCCCAATAATTTTCTAAGAGACC 581 385 4636 Antisense
GGAGTACGAGTATATGCTAGACCAA 165 517 4704 Antisense
Sequence Source Affymetrix Proprietary Database