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[179928_s_at]

Description T27C4.1 /REP_DB=WormBase Gene ID /WP=CE18295 /TR=O61906 /GB=AAC17698.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 05      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 05      6grp_total > 05      4grp_total > 30      6grp_highest_sub > De      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6848
1 2 3 4 range
A 9705.2
(3)
P 		4507.9
(-1.8)
P 		3246.3
(-3)
P 		8020
(1.4)
P 		6459
B 9120.6
(3)
P 		4576.6
(-1.4)
P 		2857.6
(-3)
P 		7801.1
(1.7)
P 		6263
C 9683.8
(3)
P 		4260.2
(-2.1)
P 		3240.6
(-3)
P 		5858
(-0.6)
P 		6443
avr 9503.2
(3) 		4448.2
(-1.7) 		3114.8
(-3) 		7226.4
(0.9) 		6388

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4459
1 2 3 4 5 6 range
A 7437.8
(3)
P 		6560.5
(1.2)
P 		4957.7
(-2.1)
P 		4809.3
(-2.4)
P 		5278.1
(-1.4)
P 		4503.6
(-3)
P 		2934
B 7323.8
(3)
P 		7154.6
(2.6)
P 		4635.9
(-3)
P 		5867.9
(-0.2)
P 		5959.7
(-0)
P 		4631.7
(-3)
P 		2692
C 8313.3
(3)
P 		6832
(1)
P 		5543.3
(-0.7)
P 		4696.7
(-1.9)
P 		5507.4
(-0.8)
P 		3854.4
(-3)
P 		4459
avr 7691.6
(3) 		6849
(1.5) 		5045.6
(-1.7) 		5124.6
(-1.6) 		5581.7
(-0.8) 		4329.9
(-3) 		3362
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2872
1 2 3 4 range
A 3533.7
(3)
P 		978.5
(-2.7)
P 		848.6
(-3)
P 		1174
(-2.3)
P 		2685
B 2908.5
(3)
P 		1130.3
(-1.7)
P 		662.2
(-3)
P 		1662.4
(-0.3)
P 		2246
C 3205.6
(3)
P 		1224.8
(-2.4)
P 		1129.4
(-2.6)
P 		987.8
(-3)
P 		2218
avr 3215.9
(3) 		1111.2
(-2.4) 		880.1
(-3) 		1274.7
(-2) 		2336

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2137
1 2 3 4 5 6 range
A 1371.1
(-1.6)
P 		2333.2
(3)
P 		1079.7
(-3)
P 		1219.7
(-2.3)
P 		1592.7
(-0.5)
P 		1096.5
(-2.9)
P 		1254
B 2548.3
(3)
P 		2381.5
(2.3)
P 		1125.7
(-3)
P 		1554.2
(-1.2)
P 		2421.4
(2.5)
P 		1727.1
(-0.5)
P 		1423
C 3081.4
(3)
P 		2084.7
(0.2)
P 		1410.9
(-1.7)
P 		944.5
(-3)
P 		1782.1
(-0.6)
P 		1290.3
(-2)
P 		2137
avr 2333.6
(3) 		2266.5
(2.6) 		1205.4
(-3) 		1239.5
(-2.8) 		1932.1
(0.9) 		1371.3
(-2.1) 		1128
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179928_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15669
Sequence Type Exemplar sequence
Representative Public ID T27C4.1 NCBI
Target Description T27C4.1 /REP_DB=WormBase Gene ID /WP=CE18295 /TR=O61906 /GB=AAC17698.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071632(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071632 NCBI Caenorhabditis elegans T27C4.1 (T27C4.1) mRNA, complete cds. 11/11 None
SNAP00000000361 ENSEMBL cdna:SNAP chromosome:CEL140:V:3713025:3714807:-1 11/11 None
GENEFINDER00000000366 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3712701:3715773:-1 10/11 None
T27C4.1.1 ENSEMBL cdna:known chromosome:CEL140:V:3712520:3715784:-1 gene:T27C4.1 11/11 None
T27C4.1.2 ENSEMBL cdna:known chromosome:CEL140:V:3712602:3715784:-1 gene:T27C4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3713024-3716151(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T27C4.1
Entrez Gene 178789 Entrez gene
SwissProt O61906 EMBL-EBI
WormBase CE33329 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17698 Hypothetical protein T27C4.1 [Caenorhabditis elegans] ref|NP_504033.2| T27C4.1 [Caenorhabditis elegans] 1.0E-129
blast CAE62555 Hypothetical protein CBG06665 [Caenorhabditis briggsae] 1.0E-121
blast AAC17698 Hypothetical protein T27C4.1 [Caenorhabditis elegans] ref|NP_504033.2| T27C4.1 [Caenorhabditis elegans] 1.0E-109
blast AAC17698 Hypothetical protein T27C4.1 [Caenorhabditis elegans] ref|NP_504033.2| T27C4.1 [Caenorhabditis elegans] 1.0E-104
blast CAE62555 Hypothetical protein CBG06665 [Caenorhabditis briggsae] 1.0E-103
blast CAE62555 Hypothetical protein CBG06665 [Caenorhabditis briggsae] 2.0E-96
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504033.2 2 85-107,151-173
T27C4.1.1 2 85-107,151-173
T27C4.1.2 2 85-107,151-173
SNAP00000000361 2 28-50,95-117
GENEFINDER00000000366 2 85-107,151-173
Sequence
Target Sequence 
>C. ELEGANS:179928_S_AT
gatgagcggagcagcgtggtacttgctaccaccgccaccggctcaacggagaggcctctt
ggtctgccgaatctgcacaatcatcgggctgttgttcctgatcgctggagccgttaccat
ctgtattgggtatacatggagagaggagagaaacatcgaacagtccatcgagcgttttgt
tctctaccaggacgagaacggtggtctctatgtgccacgtgacaagctggaaatcatcct
tcaagatccgatgcgtttgtggaagactgttggatttggaatgttcactctgggaagtct
tctgttggcattctcattggcaattccaactgccgccgcaatggtcggtaccaccagatt
cgcagcgttcgcctcgccggataattctcccaacgagccgcccgttcgggtgttccctca
ttcgtcgaatgtcgccggaatgagcagtggcccagtaccagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAGCGGAGCAGCGTGGTACTTG 13 411 360 Antisense
GGCTCAACGGAGAGGCCTCTTGGTC 178 537 399 Antisense
GGTCTGCCGAATCTGCACAATCATC 274 503 420 Antisense
CAATCATCGGGCTGTTGTTCCTGAT 684 179 437 Antisense
GGAGCCGTTACCATCTGTATTGGGT 38 523 466 Antisense
GTCCATCGAGCGTTTTGTTCTCTAC 344 477 522 Antisense
AACGGTGGTCTCTATGTGCCACGTG 681 143 556 Antisense
GTCTTCTGTTGGCATTCTCATTGGC 330 469 656 Antisense
TCATTGGCAATTCCAACTGCCGCCG 562 617 673 Antisense
AATGGTCGGTACCACCAGATTCGCA 672 161 699 Antisense
GAATGAGCAGTGGCCCAGTACCAGT 69 327 797 Antisense
Sequence Source Affymetrix Proprietary Database