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[179927_at]

Description T07D3.4 /REP_DB=WormBase Gene ID /WP=CE13361 /TR=O16723 /GB=AAB66184.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 82      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 72      6grp_total > 80      4grp_total > 47      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 731
1 2 3 4 range
A 1017.5
(3)
P 		440.9
(-2)
P 		329
(-3)
P 		345.9
(-2.9)
P 		689
B 884.1
(3)
P 		499.1
(-1.4)
P 		364.9
(-3)
P 		531.7
(-1.1)
P 		519
C 1060.2
(3)
P 		445.8
(-2.6)
P 		400.1
(-3)
P 		424.9
(-2.8)
P 		660
avr 987.3
(3) 		461.9
(-2.1) 		364.7
(-3) 		434.2
(-2.3) 		623

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 766
1 2 3 4 5 6 range
A 299.6
(-2.8)
P 		274.7
(-3)
P 		318.1
(-2.6)
P 		872.5
(3)
P 		535.9
(-0.4)
P 		437.6
(-1.4)
P 		598
B 265.7
(-1.8)
P 		176.1
(-3)
P 		327.7
(-1)
P 		635.2
(3)
P 		516.4
(1.4)
P 		419.9
(0.2)
P 		459
C 306.7
(-2.3)
P 		228
(-3)
P 		381.2
(-1.7)
P 		941.9
(3)
P 		478.5
(-0.9)
P 		443.6
(-1.2)
P 		714
avr 290.7
(-2.3) 		226.3
(-3) 		342.3
(-1.8) 		816.5
(3) 		510.3
(-0.1) 		433.7
(-0.9) 		590
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 320
1 2 3 4 range
A 370.5
(3)
P 		95.7
(-2.2)
P 		86
(-2.3)
P 		50.6
(-3)
P 		320
B 281.9
(3)
P 		123.3
(-1.8)
P 		84.6
(-3)
P 		113.3
(-2.1)
P 		197
C 351
(3)
P 		128.2
(-1.8)
P 		139.5
(-1.5)
P 		71.6
(-3)
P 		279
avr 334.5
(3) 		115.7
(-2.1) 		103.4
(-2.4) 		78.5
(-3) 		256

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 55.2
(-3)
P 		97.7
(-1.5)
P 		69.3
(-2.5)
P 		221.3
(3)
P 		161.7
(0.8)
P 		106.5
(-1.1)
P 		166
B 92.5
(-1.7)
P 		58.6
(-3)
P 		79.6
(-2.2)
P 		168.3
(1.4)
P 		209.8
(3)
P 		156.6
(0.9)
P 		151
C 113.7
(-0.8)
P 		69.6
(-3)
P 		97
(-1.6)
P 		189.4
(3)
P 		154.8
(1.3)
P 		148.5
(1)
P 		120
avr 87.1
(-2.4) 		75.3
(-3) 		82
(-2.7) 		193
(3) 		175.4
(2.1) 		137.2
(0.2) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179927_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5143
Sequence Type Exemplar sequence
Representative Public ID T07D3.4 NCBI
Target Description T07D3.4 /REP_DB=WormBase Gene ID /WP=CE13361 /TR=O16723 /GB=AAB66184.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061439(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061439 NCBI Caenorhabditis elegans T07D3.4 (T07D3.4) mRNA, complete cds. 11/11 None
SNAP00000029308 ENSEMBL cdna:SNAP chromosome:CEL140:II:889779:892557:1 10/11 None
GENEFINDER00000029315 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:887285:890690:1 11/11 None
T07D3.4 ENSEMBL cdna:known chromosome:CEL140:II:888339:890690:1 gene:T07D3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:888456-890689(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T07D3.4
Entrez Gene 173469 Entrez gene
SwissProt O16723 EMBL-EBI
WormBase CE13361 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66184 Hypothetical protein T07D3.4 [Caenorhabditis elegans] ref|NP_493840.1| T07D3.4 [Caenorhabditis elegans] 0.0
blast AAK85475 Hypothetical protein F28A10.9 [Caenorhabditis elegans] ref|NP_493827.1| F28A10.9 [Caenorhabditis elegans] 1.0E-138
blast AAK85475 Hypothetical protein F28A10.9 [Caenorhabditis elegans] ref|NP_493827.1| F28A10.9 [Caenorhabditis elegans] 1.0E-136
blast AAB66184 Hypothetical protein T07D3.4 [Caenorhabditis elegans] ref|NP_493840.1| T07D3.4 [Caenorhabditis elegans] 1.0E-126
blast AAA64323 Hypothetical protein W02B3.4 [Caenorhabditis elegans] ref|NP_497236.2| W02B3.4 [Caenorhabditis elegans] sp|Q09341|YR24_CAEEL Hypothetical protein W02B3.4 in chromosome III 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR009644 EMBL-EBI Fukutin-related 1.3E-27
Pfam IPR009644 EMBL-EBI Fukutin-related 4.5E-22
Pfam IPR009644 EMBL-EBI Fukutin-related 1.3E-27
Pfam IPR009644 EMBL-EBI Fukutin-related 4.5E-22
Pfam IPR009644 EMBL-EBI Fukutin-related 1.3E-27
Pfam IPR009644 EMBL-EBI Fukutin-related 4.5E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493840.1 1 12-27
T07D3.4 1 12-27
SNAP00000029308 1 232-254
Sequence
Target Sequence 
>C. ELEGANS:179927_AT
gtttgacatgtacccattccttaacggcggaacatttctcggctggtaccgtgagtgctc
tatcattccgcacactaccgacatggatttatcggtctttgcgaaggattataacccaat
ctacgtggaattacttcacagctactggaatccgtctagtttcgaagtttggcgaatgct
gggcatggttgaggattctttcgagatcactatacaaacgaaaaagtggttcgagtaccc
aattgacttgtttctaatgtatgaaggaatcgaaaatgggaaacttacccatcattgggt
gggcggaattgccaccgacggcaccaaatacaagttcacctaccctatctacgatccttg
gtgtgcagcggatcttcacggtcatattttctgggtctcctgtaatccactggagaaaat
tttggcagagtatggagaagactggaaaaaggatcacctctcatccgagtacagatggaa
ttattcgcagaaaaatgtgcaaacaaacgggaaatatacagcggagcagatgaagatgct
ttatagaaaggctacaatcgggttccgtgctgtacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGACATGTACCCATTCCTTAAC 560 451 624 Antisense
GGTACCGTGAGTGCTCTATCATTCC 555 503 668 Antisense
CGCACACTACCGACATGGATTTATC 369 253 692 Antisense
GGAATCCGTCTAGTTTCGAAGTTTG 662 531 770 Antisense
GGGCATGGTTGAGGATTCTTTCGAG 95 493 804 Antisense
GGTTCGAGTACCCAATTGACTTGTT 483 507 851 Antisense
AATTGCCACCGACGGCACCAAATAC 316 173 930 Antisense
ATCTACGATCCTTGGTGTGCAGCGG 313 31 970 Antisense
CTGGGTCTCCTGTAATCCACTGGAG 647 239 1014 Antisense
AAAAAGGATCACCTCTCATCCGAGT 378 129 1069 Antisense
TACAATCGGGTTCCGTGCTGTACAC 218 641 1176 Antisense
Sequence Source Affymetrix Proprietary Database