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[179926_at]

Description F59H6.4 /REP_DB=WormBase Gene ID /WP=CE20910 /TR=Q9N5Q6 /GB=AAF39862.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 04      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 9.6
(0)
A 		3.2
(-3)
A 		3.8
(-2.7)
A 		15.9
(3)
A 		13
B 5.5
(-1.4)
A 		1.8
(-3)
A 		2.3
(-2.8)
A 		15.8
(3)
A 		14
C 2.9
(-2.7)
A 		4
(-2.3)
A 		2.2
(-3)
A 		17.1
(3)
A 		15
avr 6
(-1.6) 		3
(-2.9) 		2.8
(-3) 		16.3
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 5.3
(-2.8)
A 		6
(-2.8)
A 		3.1
(-3)
A 		13.1
(-2.3)
A 		23.1
(-1.5)
A 		85.6
(3)
M 		83
B 7.2
(-2.5)
A 		2.4
(-3)
A 		5.2
(-2.7)
A 		9.6
(-2.3)
A 		29.1
(-0.5)
A 		65.6
(3)
A 		63
C 2.4
(-3)
A 		13.4
(-2.2)
A 		2.2
(-3)
A 		2.7
(-3)
A 		18.4
(-1.9)
A 		90.4
(3)
P 		88
avr 5
(-2.9) 		7.3
(-2.7) 		3.5
(-3) 		8.5
(-2.6) 		23.5
(-1.4) 		80.5
(3) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 3.5
(3)
A 		0.7
(-3)
A 		1
(-2.4)
A 		2.3
(0.4)
A 		3
B 1.8
(-0.2)
A 		0.4
(-3)
A 		0.5
(-2.8)
A 		3.4
(3)
A 		3
C 1
(-2.4)
A 		1.1
(-2.1)
A 		0.8
(-3)
A 		2.9
(3)
A 		2
avr 2.1
(0.8) 		0.7
(-3) 		0.8
(-2.7) 		2.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 1
(-2.9)
A 		2.1
(-2.6)
A 		0.7
(-3)
A 		3.3
(-2.2)
A 		7
(-1.1)
A 		20.9
(3)
M 		20
B 2.5
(-2.6)
A 		0.8
(-3)
A 		1.3
(-2.9)
A 		2.6
(-2.5)
A 		11.8
(-0.2)
A 		24.4
(3)
A 		24
C 0.9
(-2.9)
A 		4.1
(-2.3)
A 		0.6
(-3)
A 		0.5
(-3)
A 		6
(-1.9)
A 		30.3
(3)
P 		30
avr 1.5
(-2.9) 		2.3
(-2.7) 		0.9
(-3) 		2.1
(-2.7) 		8.3
(-1.2) 		25.2
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179926_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5139
Sequence Type Exemplar sequence
Representative Public ID F59H6.4 NCBI
Target Description F59H6.4 /REP_DB=WormBase Gene ID /WP=CE20910 /TR=Q9N5Q6 /GB=AAF39862.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061749(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061749 NCBI Caenorhabditis elegans F59H6.4 (F59H6.4) mRNA, complete cds. 11/11 None
F59H6.4 ENSEMBL cdna:known chromosome:CEL140:II:2010651:2013387:1 gene:F59H6.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002421 8/11 Cross Hyb Matching Probes None
GENEFINDER00000002444 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2010649-2013386(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59H6.4
Entrez Gene 186643 Entrez gene
SwissProt Q9N5Q6 EMBL-EBI
WormBase CE20910 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39862 Hypothetical protein F59H6.4 [Caenorhabditis elegans] ref|NP_494150.1| F59H6.4 [Caenorhabditis elegans] 1.0E-130
blast AAB93658 Hypothetical protein C16C4.14 [Caenorhabditis elegans] ref|NP_494112.1| C16C4.14 [Caenorhabditis elegans] 6.0E-76
blast AAB94973 Hypothetical protein F52C6.5 [Caenorhabditis elegans] ref|NP_494119.1| F52C6.5 [Caenorhabditis elegans] 1.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 4.3E-14
Pfam IPR002083 EMBL-EBI MATH 3.0E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494150.1 2 217-239,246-268
F59H6.4 2 217-239,246-268
Sequence
Target Sequence 
>C. ELEGANS:179926_AT
gtcgcgttctatggcaaggttgtgtttgaaaacccagtgggtcgtggatggggtaaactc
ataagatgggaaaactggtcaaacatgtgcaacgatgcttttgtatttgaagcgaatgtg
aagattctggacacgactggaattgaggacgagaatgatgttgataggttctctggattt
gcgataccagtgggggatcaggagtattcaatggagaacaatttttcatcgaattttcca
gatattttgcaccgattcaaacgacaagtggggtcaggacctccgcttttcatattaatt
ctcatcggagtttttgtactgattttcatcacatgtttcgtcgggactgtagttgcttgc
attcgaacttgctgtggttacggtggtggatatggtggtggatactatggaggtggtggt
ggaatgtatgcacctgggtactatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGCGTTCTATGGCAAGGTTGTGT 83 475 376 Antisense
AAACTGGTCAAACATGTGCAACGAT 92 123 447 Antisense
GAATTTTCCAGATATTTTGCACCGA 517 325 606 Antisense
GACAAGTGGGGTCAGGACCTCCGCT 265 363 638 Antisense
GGACCTCCGCTTTTCATATTAATTC 329 523 652 Antisense
ATTCTCATCGGAGTTTTTGTACTGA 338 11 673 Antisense
TTCATCACATGTTTCGTCGGGACTG 604 687 700 Antisense
GTCGGGACTGTAGTTGCTTGCATTC 258 473 715 Antisense
GTTGCTTGCATTCGAACTTGCTGTG 265 439 727 Antisense
GAACTTGCTGTGGTTACGGTGGTGG 450 349 740 Antisense
GAATGTATGCACCTGGGTACTATGG 148 331 797 Antisense
Sequence Source Affymetrix Proprietary Database