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[179925_at]

Description T02C5.2 /REP_DB=WormBase Gene ID /WP=CE04849 /TR=Q22094 /GB=AAB36869.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 55      4grp_highest_8_8 > 56      4grp_high_8_8 > 26      6grp_highest_nonorm > 81      6grp_total > 45      4grp_total > 37      6grp_highest_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 363.4
(1.3)
P 		307.4
(-3)
P 		385.1
(3)
P 		359.8
(1)
P 		78
B 412.7
(3)
P 		383.8
(1.7)
P 		274.6
(-3)
P 		380.2
(1.6)
P 		138
C 347.9
(1.2)
P 		378.8
(3)
P 		283
(-2.6)
P 		275.3
(-3)
P 		104
avr 374.7
(3) 		356.7
(1.2) 		314.2
(-3) 		338.4
(-0.6) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 226.5
(-3)
P 		294
(2.5)
P 		300.3
(3)
P 		228.5
(-2.8)
P 		243.2
(-1.6)
P 		292.4
(2.4)
P 		74
B 318.5
(3)
P 		275.9
(0.3)
P 		316.4
(2.9)
P 		283.9
(0.8)
P 		225.4
(-3)
P 		310.9
(2.5)
P 		93
C 321.8
(3)
P 		284.3
(0.7)
P 		265.8
(-0.5)
P 		238.9
(-2.1)
P 		224.9
(-3)
P 		296.6
(1.4)
P 		97
avr 288.9
(2) 		284.7
(1.7) 		294.2
(2.5) 		250.4
(-1.3) 		231.2
(-3) 		300
(3) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 132.3
(3)
P 		66.7
(-1.9)
P 		100.7
(0.6)
P 		52.7
(-3)
P 		80
B 131.6
(3)
P 		94.8
(-0.2)
P 		63.6
(-3)
P 		81
(-1.5)
P 		68
C 115.2
(3)
P 		108.9
(2.5)
P 		98.6
(1.6)
P 		46.4
(-3)
P 		69
avr 126.4
(3) 		90.1
(-0.3) 		87.6
(-0.5) 		60
(-3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 41.7
(-3)
P 		104.6
(3)
P 		65.4
(-0.7)
P 		58
(-1.4)
P 		73.4
(0)
P 		71.2
(-0.2)
P 		63
B 110.8
(2.2)
P 		91.9
(-0.5)
P 		76.8
(-2.8)
P 		75.2
(-3)
P 		91.6
(-0.6)
P 		115.9
(3)
P 		41
C 119.3
(3)
P 		86.7
(0.3)
P 		67.7
(-1.3)
P 		48
(-3)
P 		72.8
(-0.9)
P 		99.3
(1.3)
P 		71
avr 90.6
(2.2) 		94.4
(2.8) 		70
(-1.4) 		60.4
(-3) 		79.3
(0.2) 		95.5
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179925_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18435
Sequence Type Exemplar sequence
Representative Public ID T02C5.2 NCBI
Target Description T02C5.2 /REP_DB=WormBase Gene ID /WP=CE04849 /TR=Q22094 /GB=AAB36869.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076076(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076076 NCBI Caenorhabditis elegans T02C5.2 (T02C5.2) mRNA, complete cds. 11/11 None
GENEFINDER00000029800 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2689908:2691555:1 11/11 None
SNAP00000029788 ENSEMBL cdna:SNAP chromosome:CEL140:X:2690342:2691555:1 11/11 None
T02C5.2 ENSEMBL cdna:known chromosome:CEL140:X:2690342:2692161:1 gene:T02C5.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2690341-2691555(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T02C5.2
Entrez Gene 180567 Entrez gene
SwissProt Q22094 EMBL-EBI
WormBase CE04849 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE58844 Hypothetical protein CBG02063 [Caenorhabditis briggsae] 2.0E-88
blast AAB36869 Hypothetical protein T02C5.2 [Caenorhabditis elegans] ref|NP_508477.1| T02C5.2 [Caenorhabditis elegans] 1.0E-55
blast AAB36869 Hypothetical protein T02C5.2 [Caenorhabditis elegans] ref|NP_508477.1| T02C5.2 [Caenorhabditis elegans] 4.0E-55
blast CAE58844 Hypothetical protein CBG02063 [Caenorhabditis briggsae] 5.0E-49
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508477.1 1 28-50
T02C5.2 1 28-50
GENEFINDER00000029800 3 57-79,94-113,125-147
SNAP00000029788 1 28-50
Sequence
Target Sequence 
>C. ELEGANS:179925_AT
tactctttgctgctgcacaattgccatcattgcgcaaaccgacatttccgaccaacgcga
agacgacatcgttgccattggcgctggagttttcctcgtgtgcatttctggtcttttgtc
ctttcttgcagcaatggctagcattcgtcacagcaatcgcaaaactcgaatgcgcagaat
tgacaaccagcgtcttctttgtgcacgctcactacgctcatggagggatgcagggcgccg
ttcggaggacgtttgtccgatcgttgattttgagagatatttggacgattgcaccgaact
cgagcaaacatcttccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTCTTTGCTGCTGCACAATTGCC 331 645 18 Antisense
CATCATTGCGCAAACCGACATTTCC 533 213 42 Antisense
CATTTCCGACCAACGCGAAGACGAC 152 215 60 Antisense
ATCGTTGCCATTGGCGCTGGAGTTT 393 35 85 Antisense
TCTTTTGTCCTTTCTTGCAGCAATG 132 615 129 Antisense
GGCTAGCATTCGTCACAGCAATCGC 5 539 153 Antisense
TGACAACCAGCGTCTTCTTTGTGCA 624 571 198 Antisense
ACGCTCACTACGCTCATGGAGGGAT 694 89 222 Antisense
GCCGTTCGGAGGACGTTTGTCCGAT 307 279 254 Antisense
ATATTTGGACGATTGCACCGAACTC 358 19 294 Antisense
ACCGAACTCGAGCAAACATCTTCCC 333 87 310 Antisense
Sequence Source Affymetrix Proprietary Database