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[179924_at]

Description M01D1.3 /REP_DB=WormBase Gene ID /WP=CE23871 /TR=O17223 /GB=AAB70996.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 34      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 4.6
(-3)
A 		7.5
(-1.4)
A 		15.5
(3)
A 		12.2
(1.2)
A 		11
B 7.3
(-3)
A 		58.8
(3)
A 		25
(-0.9)
A 		24
(-1.1)
A 		52
C 8.7
(-2.5)
A 		5.8
(-3)
A 		7.4
(-2.7)
A 		38.8
(3)
A 		33
avr 6.9
(-3) 		24
(2.7) 		16
(0) 		25
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 9.3
(-2.4)
A 		2.3
(-3)
A 		27.4
(-0.7)
A 		25.1
(-0.9)
A 		57.3
(2)
A 		68.7
(3)
A 		66
B 38.5
(-1.7)
A 		6.3
(-3)
A 		43.1
(-1.5)
A 		7.3
(-3)
A 		30.4
(-2)
A 		153.9
(3)
P 		148
C 8
(-3)
A 		32.5
(-1.8)
A 		8.3
(-3)
A 		11.2
(-2.8)
A 		41.3
(-1.3)
A 		127.6
(3)
P 		120
avr 18.6
(-2.7) 		13.7
(-3) 		26.3
(-2.3) 		14.5
(-3) 		43
(-1.3) 		116.7
(3) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.7
(-2.8)
A 		1.6
(-3)
A 		4.1
(3)
A 		1.8
(-2.5)
A 		3
B 2.3
(-3)
A 		14.5
(3)
A 		5.8
(-1.3)
A 		5.1
(-1.6)
A 		12
C 2.9
(-1.5)
A 		1.7
(-3)
A 		2.6
(-1.9)
A 		6.5
(3)
A 		5
avr 2.3
(-3) 		5.9
(3) 		4.2
(0.2) 		4.5
(0.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 1.7
(-2.7)
A 		0.8
(-3)
A 		6
(-1.1)
A 		6.4
(-1)
A 		17.3
(3)
A 		16.7
(2.8)
A 		17
B 13.4
(-1.8)
A 		2.1
(-3)
A 		10.5
(-2.1)
A 		1.9
(-3)
A 		12.4
(-1.9)
A 		57.4
(3)
P 		56
C 3
(-2.9)
A 		9.9
(-1.8)
A 		2.1
(-3)
A 		2.2
(-3)
A 		13.4
(-1.3)
A 		42.7
(3)
P 		41
avr 6
(-2.6) 		4.3
(-2.9) 		6.2
(-2.5) 		3.5
(-3) 		14.4
(-1.2) 		38.9
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179924_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5113
Sequence Type Exemplar sequence
Representative Public ID M01D1.3 NCBI
Target Description M01D1.3 /REP_DB=WormBase Gene ID /WP=CE23871 /TR=O17223 /GB=AAB70996.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061489(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061489 NCBI Caenorhabditis elegans M01D1.3 (M01D1.3) mRNA, complete cds. 11/11 None
SNAP00000029282 ENSEMBL cdna:SNAP chromosome:CEL140:II:1023753:1024785:-1 11/11 None
GENEFINDER00000029294 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1023753:1024785:-1 11/11 None
M01D1.3 ENSEMBL cdna:known chromosome:CEL140:II:1023753:1024785:-1 gene:M01D1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1023751-1024784(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M01D1.3
Entrez Gene 173481 Entrez gene
SwissProt O17223 EMBL-EBI
WormBase CE23871 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB70996 Hypothetical protein M01D1.3 [Caenorhabditis elegans] ref|NP_493890.1| M01D1.3 [Caenorhabditis elegans] 1.0E-170
blast AAB71029 Hypothetical protein K02E7.9 [Caenorhabditis elegans] ref|NP_493902.1| K02E7.9 [Caenorhabditis elegans] 1.0E-144
blast B88036 protein M01D1.3 [imported] - Caenorhabditis elegans 2.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 6.8E-30
Sequence
Target Sequence 
>C. ELEGANS:179924_AT
ttcctatatgaataccgctggtcgttttcgttcaatctaaaacttcaccgcgacccagcc
aaaccaccccagatttctaatgacctcaaatctcaggtgtcttatgacacaatgtttgag
ccatccaggaagcacgatgcggtgctcttaattggggagaagaagcttcatgtgaacaag
gctttcctctcctatcactccgactatttttctgatctattcgctgagaaagtcgacgag
aagaacgggatcccgatcgaaaacgtgacctatgagaatttcgggcttctcatgagtgtc
atctaccctgaagcggttttctcgaatcaccagaacgctgaagtccttctcgagctggga
aatcgtttcaagattccggctgtgatgcgtcacgtggaaaaccaaatcgttggagacacc
accaagttcccaaataaacggttgatttccctggcagagaaatacggacttcaaaagcta
ttggctatggaaatccagaagatgaaaagcttcgaccaggctaagaagttcaaaggatcg
gacgattacttgcagttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCTATATGAATACCGCTGGTCGT 650 697 298 Antisense
TTCAATCTAAAACTTCACCGCGACC 169 683 328 Antisense
ACCACCCCAGATTTCTAATGACCTC 707 85 360 Antisense
CCTATCACTCCGACTATTTTTCTGA 351 269 488 Antisense
CTATTTTTCTGATCTATTCGCTGAG 527 223 501 Antisense
GGGCTTCTCATGAGTGTCATCTACC 258 493 580 Antisense
GAAGCGGTTTTCTCGAATCACCAGA 532 333 607 Antisense
CAAGATTCCGGCTGTGATGCGTCAC 232 185 666 Antisense
GTTGGAGACACCACCAAGTTCCCAA 274 435 706 Antisense
AATAAACGGTTGATTTCCCTGGCAG 187 149 730 Antisense
GGATCGGACGATTACTTGCAGTTGT 131 513 832 Antisense
Sequence Source Affymetrix Proprietary Database