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[179923_at]

Description C23H3.3 /REP_DB=WormBase Gene ID /WP=CE08322 /TR=P91080 /GB=AAK31443.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      4grp_highest_8_8 > 38      4grp_high_8_8 > 04      6grp_highest_nonorm > 95      6grp_total > 86      4grp_total > 05      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 694
1 2 3 4 range
A 615.4
(-0.5)
P 		381.5
(-3)
P 		477.4
(-2)
P 		948.5
(3)
P 		567
B 648.6
(-0.9)
P 		426.6
(-3)
P 		512.5
(-2.2)
P 		1075
(3)
P 		648
C 684.7
(-0.7)
P 		498.8
(-3)
P 		506.8
(-2.9)
P 		994
(3)
P 		495
avr 649.6
(-0.7) 		435.6
(-3) 		498.9
(-2.3) 		1005.8
(3) 		570

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 500
1 2 3 4 5 6 range
A 631.3
(-2.5)
P 		599.2
(-3)
P 		676.1
(-1.8)
P 		764.6
(-0.5)
P 		691.8
(-1.6)
P 		996.6
(3)
P 		397
B 723
(0)
P 		534.9
(-3)
P 		628
(-1.5)
P 		691.7
(-0.5)
P 		652.4
(-1.1)
P 		909.1
(3)
P 		374
C 570
(-1.9)
P 		497.1
(-3)
P 		764.7
(0.9)
P 		743
(0.5)
P 		913
(3)
P 		881
(2.5)
P 		416
avr 641.4
(-1.5) 		543.7
(-3) 		689.6
(-0.7) 		733.1
(-0) 		752.4
(0.3) 		928.9
(3) 		385
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 224.1
(3)
P 		82.8
(-3)
P 		124.8
(-1.2)
P 		138.8
(-0.6)
P 		141
B 206.8
(1.9)
P 		105.4
(-3)
P 		118.8
(-2.4)
P 		229.1
(3)
P 		124
C 226.7
(3)
P 		143.4
(-3)
P 		176.6
(-0.6)
P 		167.6
(-1.3)
P 		83
avr 219.2
(3) 		110.5
(-3) 		140.1
(-1.4) 		178.5
(0.8) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 116.4
(-3)
P 		213.1
(1.6)
P 		147.2
(-1.5)
P 		193.9
(0.7)
P 		208.8
(1.4)
P 		242.6
(3)
P 		126
B 251.6
(0.2)
P 		178
(-2.2)
P 		152.5
(-3)
P 		183.2
(-2)
P 		265
(0.6)
P 		339
(3)
P 		187
C 211.3
(-0.5)
P 		151.7
(-2.9)
P 		194.6
(-1.1)
P 		149.4
(-3)
P 		295.4
(3)
P 		294.9
(3)
P 		146
avr 193.1
(-1.7) 		180.9
(-2.2) 		164.8
(-3) 		175.5
(-2.5) 		256.4
(1.3) 		292.2
(3) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179923_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5103
Sequence Type Exemplar sequence
Representative Public ID C23H3.3 NCBI
Target Description C23H3.3 /REP_DB=WormBase Gene ID /WP=CE08322 /TR=P91080 /GB=AAK31443.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061249(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061249 NCBI Caenorhabditis elegans C23H3.3 (C23H3.3) mRNA, complete cds. 11/11 None
SNAP00000015918 ENSEMBL cdna:SNAP chromosome:CEL140:II:57672:59989:1 9/11 None
GENEFINDER00000015930 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:57672:59989:1 11/11 None
C23H3.3 ENSEMBL cdna:known chromosome:CEL140:II:57672:59904:1 gene:C23H3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:57671-59904(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C23H3.3
Entrez Gene 182817 Entrez gene
SwissProt P91080 EMBL-EBI
WormBase CE08322 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258053_AT expressed protein at
CANINE_2:CFA.2747.1.A1_AT similar to activating signal cointegrator 1 complex subunit 1 cfa
CANINE_2:CFAAFFX.22254.1.S1_AT similar to activating signal cointegrator 1 complex subunit 1 cfa
DROSOPHILA_2:1628714_AT dm
DROSGENOME1:154020_AT dm
CHICKEN:GGA.1151.2.S1_AT similar to ASCC1 protein gga
HG-U133_PLUS_2:219336_S_AT activating signal cointegrator 1 complex subunit 1 hs
HG-U133A:219336_S_AT activating signal cointegrator 1 complex subunit 1 hs
HG-U133A_2:219336_S_AT activating signal cointegrator 1 complex subunit 1 hs
HU35KSUBA:AA446137_AT activating signal cointegrator 1 complex subunit 1 hs
HU35KSUBD:RC_AA282796_AT activating signal cointegrator 1 complex subunit 1 hs
U133_X3P:G7705601_3P_A_AT activating signal cointegrator 1 complex subunit 1 hs
U133_X3P:HS2.121599.2.S1_3P_S_AT activating signal cointegrator 1 complex subunit 1 hs
HG-U133_PLUS_2:1554627_A_AT activating signal cointegrator 1 complex subunit 1 hs
HG-U95C:65150_AT activating signal cointegrator 1 complex subunit 1 hs
HG-U95E:78219_AT activating signal cointegrator 1 complex subunit 1 hs
HG-U95B:47178_AT Activating signal cointegrator 1 complex subunit 1 hs
HU35KSUBD:RC_AA609338_AT Activating signal cointegrator 1 complex subunit 1 hs
MU11KSUBA:AA014261_S_AT activating signal cointegrator 1 complex subunit 1 mm
MG-U74AV2:92375_AT activating signal cointegrator 1 complex subunit 1 mm
MG-U74BV2:164886_F_AT activating signal cointegrator 1 complex subunit 1 mm
MG-U74CV2:166744_AT activating signal cointegrator 1 complex subunit 1 mm
MOE430A:1460703_AT activating signal cointegrator 1 complex subunit 1 mm
MOUSE430A_2:1460703_AT activating signal cointegrator 1 complex subunit 1 mm
MOUSE430_2:1460703_AT activating signal cointegrator 1 complex subunit 1 mm
MG-U74BV2:109522_AT Activating signal cointegrator 1 complex subunit 1, mRNA (cDNA clone MGC:31553 IMAGE:4503445) mm
MOE430B:1438539_AT Activating signal cointegrator 1 complex subunit 1, mRNA (cDNA clone MGC:31553 IMAGE:4503445) mm
MOUSE430_2:1438539_AT Activating signal cointegrator 1 complex subunit 1, mRNA (cDNA clone MGC:31553 IMAGE:4503445) mm
MOE430B:1442874_AT Activating signal cointegrator 1 complex subunit 1, mRNA (cDNA clone MGC:31553 IMAGE:4503445) mm
MOUSE430_2:1442874_AT Activating signal cointegrator 1 complex subunit 1, mRNA (cDNA clone MGC:31553 IMAGE:4503445) mm
MU19KSUBA:TC16486_AT Activating signal cointegrator 1 complex subunit 1, mRNA (cDNA clone MGC:31553 IMAGE:4503445) mm
MU19KSUBA:TC16486_G_AT Activating signal cointegrator 1 complex subunit 1, mRNA (cDNA clone MGC:31553 IMAGE:4503445) mm
MU19KSUBC:TC39690_AT Activating signal cointegrator 1 complex subunit 1, mRNA (cDNA clone MGC:31553 IMAGE:4503445) mm
RG-U34B:RC_AI044617_AT activating signal cointegrator 1 complex subunit 1 rn
RAE230A:1375907_AT activating signal cointegrator 1 complex subunit 1 rn
RAT230_2:1375907_AT activating signal cointegrator 1 complex subunit 1 rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK31443 Hypothetical protein C23H3.3 [Caenorhabditis elegans] ref|NP_493650.1| C23H3.3 [Caenorhabditis elegans] 0.0
blast AAK31443 Hypothetical protein C23H3.3 [Caenorhabditis elegans] ref|NP_493650.1| C23H3.3 [Caenorhabditis elegans] 1.0E-174
blast CAE62819 Hypothetical protein CBG06998 [Caenorhabditis briggsae] 1.0E-133
blast CAE62819 Hypothetical protein CBG06998 [Caenorhabditis briggsae] 1.0E-109
blast AAF58859 CG12129-PA [Drosophila melanogaster] gb|AAM48358.1| LD21545p [Drosophila melanogaster] ref|NP_610545.1| CG12129-PA [Drosophila melanogaster] 2.0E-27
blast AAF58859 CG12129-PA [Drosophila melanogaster] gb|AAM48358.1| LD21545p [Drosophila melanogaster] ref|NP_610545.1| CG12129-PA [Drosophila melanogaster] 2.0E-25
Sequence
Target Sequence 
>C. ELEGANS:179923_AT
cgtgtaaatcacttcgtagctctgccctgcgaccaacatgaggttcaagagaacttcaat
attttcaagcaaatggttatggaaagcgatcattttgatagctcgtgtaaaaattcgcaa
ctgttcacaaaacctacacgtcttcatttgaccctttccgtcgctagaatttttgatgat
atggatctacaaaaggccgttggtgcgttcgaaattttagagaaggaaatcagacaaata
aaggattcgaaaccgttgatcgcagatattcaaggaatcgatatgatgaatgacgatcca
tcacaagttttcgtgctttatgcgaaagtgaagggagataaagtccaagaagtggcaaac
tatgtgaatcgtcgcctaatcgaacttggagtaagctctaaaaacgagcacgataatgga
tccgacgccgtgaagctacatatgactctgatgaattcaagatatgttactcaatctgaa
aagtctggaaaaagtaaagaagccgctttgtttgatgcaaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTGTAAATCACTTCGTAGCTCTGC 534 245 535 Antisense
TGCCCTGCGACCAACATGAGGTTCA 68 583 557 Antisense
GTTCACAAAACCTACACGTCTTCAT 702 443 657 Antisense
CCTTTCCGTCGCTAGAATTTTTGAT 433 269 687 Antisense
TACAAAAGGCCGTTGGTGCGTTCGA 469 641 722 Antisense
GGATTCGAAACCGTTGATCGCAGAT 324 509 777 Antisense
ATCACAAGTTTTCGTGCTTTATGCG 200 27 834 Antisense
GCAAACTATGTGAATCGTCGCCTAA 206 319 889 Antisense
GAATCGTCGCCTAATCGAACTTGGA 208 327 900 Antisense
GATCCGACGCCGTGAAGCTACATAT 485 415 953 Antisense
GAAGCCGCTTTGTTTGATGCAAAAC 592 343 1033 Antisense
Sequence Source Affymetrix Proprietary Database