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[179922_s_at]

Description C18B2.4 /REP_DB=WormBase Gene ID /WP=CE04043 /TR=Q18075 /GB=AAK39174.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 02      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 66      6grp_total > 24      4grp_total > 11      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 488
1 2 3 4 range
A 1588.1
(-3)
P 		1781.3
(0.9)
P 		1691.9
(-0.9)
P 		1887.6
(3)
P 		300
B 1663.3
(-0.8)
P 		1568.8
(-3)
P 		1673.4
(-0.6)
P 		1825.9
(3)
P 		257
C 1667.4
(2.1)
P 		1488.5
(-1.3)
P 		1400.1
(-3)
P 		1713.3
(3)
P 		313
avr 1639.6
(-1.6) 		1612.9
(-2.3) 		1588.5
(-3) 		1808.9
(3) 		220

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 777
1 2 3 4 5 6 range
A 1593.2
(3)
P 		1547.4
(2.4)
P 		1197.4
(-2)
P 		1278.5
(-0.9)
P 		1115.1
(-3)
P 		1352
(-0)
P 		478
B 1413.1
(3)
P 		1330.4
(1.7)
P 		1289.6
(1.1)
P 		1155
(-1.1)
P 		1042.7
(-2.8)
P 		1031.3
(-3)
P 		382
C 1780.5
(3)
P 		1134.2
(-2)
P 		1679.2
(2.2)
P 		1114.3
(-2.1)
P 		1219.5
(-1.3)
P 		1003.3
(-3)
P 		777
avr 1595.6
(3) 		1337.3
(-0.3) 		1388.7
(0.4) 		1182.6
(-2.3) 		1125.8
(-3) 		1128.9
(-3) 		470
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 302
1 2 3 4 range
A 578.2
(3)
P 		386.7
(-0.8)
P 		442.3
(0.3)
P 		276.3
(-3)
P 		302
B 530.4
(3)
P 		387.5
(-3)
P 		387.8
(-3)
P 		389.1
(-2.9)
P 		143
C 552
(3)
P 		427.9
(0.2)
P 		488
(1.5)
P 		288.9
(-3)
P 		263
avr 553.5
(3) 		400.7
(-0.9) 		439.4
(0.1) 		318.1
(-3) 		235

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 436
1 2 3 4 5 6 range
A 293.7
(-2.3)
P 		550.3
(3)
P 		260.8
(-3)
P 		324.3
(-1.7)
P 		336.5
(-1.4)
P 		329.2
(-1.6)
P 		290
B 491.7
(3)
P 		442.8
(1.4)
P 		313.2
(-2.8)
P 		305.9
(-3)
P 		423.6
(0.8)
P 		384.6
(-0.5)
P 		186
C 660
(3)
P 		346.1
(-1.3)
P 		427.4
(-0.2)
P 		224.1
(-3)
P 		394.6
(-0.7)
P 		335.9
(-1.5)
P 		436
avr 481.8
(3) 		446.4
(1.9) 		333.8
(-1.5) 		284.8
(-3) 		384.9
(0) 		349.9
(-1) 		197
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179922_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18436
Sequence Type Exemplar sequence
Representative Public ID C18B2.4 NCBI
Target Description C18B2.4 /REP_DB=WormBase Gene ID /WP=CE04043 /TR=Q18075 /GB=AAK39174.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076219(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076219 NCBI Caenorhabditis elegans C18B2.4 (C18B2.4) mRNA, complete cds. 11/11 None
SNAP00000016048 ENSEMBL cdna:SNAP chromosome:CEL140:X:3604497:3605953:-1 11/11 None
GENEFINDER00000016057 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3604497:3611077:-1 11/11 None
C18B2.4 ENSEMBL cdna:known chromosome:CEL140:X:3604358:3605728:-1 gene:C18B2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3604497-3605722(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18B2.4
Entrez Gene 180652 Entrez gene
SwissProt Q18075 EMBL-EBI
WormBase CE04043 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.16290.1.S1_AT similar to WW domain binding protein 2 cfa
CANINE_2:CFA.16290.2.S1_A_AT similar to WW domain binding protein 2 cfa
CANINE_2:CFAAFFX.8343.1.S1_S_AT similar to WW domain binding protein 2 cfa
DROSOPHILA_2:1635218_AT dm
DROSGENOME1:153113_AT dm
CHICKEN:GGA.5297.1.S1_AT WW domain binding protein 2 gga
HU35KSUBA:RC_AA284506_S_AT WW domain binding protein 2 hs
HG-U133A:209117_AT WW domain binding protein 2 hs
HG-U133_PLUS_2:209117_AT WW domain binding protein 2 hs
HG-U133A_2:209117_AT WW domain binding protein 2 hs
U133_X3P:G4205085_3P_AT WW domain binding protein 2 hs
HG-U95AV2:33438_AT WW domain binding protein 2 hs
HU35KSUBA:AA496423_AT WW domain binding protein 2 hs
MOE430A:1448121_AT WW domain binding protein 2 mm
MOUSE430A_2:1448121_AT WW domain binding protein 2 mm
MOUSE430_2:1448121_AT WW domain binding protein 2 mm
MU11KSUBA:U40826_S_AT WW domain binding protein 2 mm
MG-U74AV2:92863_AT WW domain binding protein 2 mm
RAE230A:1369592_AT WW domain binding protein 2 rn
RAT230_2:1369592_AT WW domain binding protein 2 rn
RAE230A:1374394_AT WW domain binding protein 2 rn
RAT230_2:1374394_AT WW domain binding protein 2 rn
RG-U34B:RC_AA944155_AT WW domain binding protein 2 rn
Protein Similarities
Method ID Description E-Value
blast AAK39176 Hypothetical protein C18B2.5a [Caenorhabditis elegans] ref|NP_741750.1| C18B2.5a [Caenorhabditis elegans] 0.0
blast AAM51516 Hypothetical protein C18B2.5b [Caenorhabditis elegans] ref|NP_741751.1| C18B2.5b [Caenorhabditis elegans] 0.0
blast CAE68453 Hypothetical protein CBG14243 [Caenorhabditis briggsae] 0.0
blast AAK39174 Hypothetical protein C18B2.4 [Caenorhabditis elegans] ref|NP_508620.1| C18B2.4 [Caenorhabditis elegans] 1.0E-148
blast AAK39174 Hypothetical protein C18B2.4 [Caenorhabditis elegans] ref|NP_508620.1| C18B2.4 [Caenorhabditis elegans] 1.0E-135
blast CAE68452 Hypothetical protein CBG14242 [Caenorhabditis briggsae] 1.0E-129
blast CAE68452 Hypothetical protein CBG14242 [Caenorhabditis briggsae] 1.0E-117
blast CAE72909 Hypothetical protein CBG20227 [Caenorhabditis briggsae] 5.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR004182 EMBL-EBI GRAM domain 1.4E-13
Pfam IPR004182 EMBL-EBI GRAM domain 1.4E-13
Pfam IPR004182 EMBL-EBI GRAM domain 1.4E-13
Sequence
Target Sequence 
>C. ELEGANS:179922_S_AT
ggatgtccggaatggcgtttgtctttcccgaaaggaggatgcatcgagtttggagaggca
cttcttcgcgctgctgacatggcatctagagctcgtccatttgctgctccaccagcatat
ggtggaaatatgcaacagcaatcaggcactacgtactatgctgctccaccgacatactac
ttggtgcaagggacataccaaggattccaagctccgacgaacgtttttcctgagcgccca
cctgcacaaaacgtctacgtttacgacatgcctccaccatacccaggaatcggacaaacc
acgccgtatcctgccggacaattccagccagtcggaaccgtccagtaccagaatgttggg
gcgtaccctggacaacctcaacagccaggacaataccatccttatccaactaatcaacca
ccgcagggaggattcaacgtcggacaaggagctgctcctcatccttctactcttccagat
tataacaatattcaacaacaatctagcgctcagcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGTCCGGAATGGCGTTTGTCTT 406 513 328 Antisense
GCGCTGCTGACATGGCATCTAGAGC 520 285 395 Antisense
CATCTAGAGCTCGTCCATTTGCTGC 367 213 410 Antisense
TCAGGCACTACGTACTATGCTGCTC 481 623 469 Antisense
CAAGCTCCGACGAACGTTTTTCCTG 114 185 535 Antisense
AACGTCTACGTTTACGACATGCCTC 166 143 577 Antisense
GGAATCGGACAAACCACGCCGTATC 359 533 613 Antisense
ACAATTCCAGCCAGTCGGAACCGTC 286 69 645 Antisense
AATACCATCCTTATCCAACTAATCA 81 173 719 Antisense
GACAAGGAGCTGCTCCTCATCCTTC 255 365 770 Antisense
TCAACAACAATCTAGCGCTCAGCCA 139 631 819 Antisense
Sequence Source Affymetrix Proprietary Database