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[179921_s_at]

Description M01D1.9 /REP_DB=WormBase Gene ID /WP=CE12258 /TR=O17231 /GB=AAB71000.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 0.9
(-3)
A 		52.3
(3)
A 		2.2
(-2.8)
A 		40.9
(1.7)
A 		51
B 20.8
(3)
A 		4.7
(-2.9)
A 		4.3
(-3)
A 		5.3
(-2.6)
A 		17
C 1.7
(-3)
A 		6
(-1.6)
A 		7.9
(-1)
A 		20.7
(3)
A 		19
avr 7.8
(-2) 		21
(2.6) 		4.8
(-3) 		22.3
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 3.1
(-0.1)
A 		0.8
(-3)
A 		2
(-1.5)
A 		2
(-1.5)
A 		3.7
(0.7)
A 		5.5
(3)
A 		5
B 3
(-2.4)
A 		15
(0.7)
A 		23.6
(3)
A 		15.1
(0.8)
A 		0.8
(-3)
A 		16.3
(1.1)
A 		23
C 6.9
(-1.8)
A 		1.2
(-3)
A 		1.4
(-3)
A 		4.6
(-2.3)
A 		3.1
(-2.6)
A 		28.7
(3)
A 		28
avr 4.3
(-2.2) 		5.7
(-1.7) 		9
(-0.3) 		7.2
(-1) 		2.5
(-3) 		16.8
(3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.3
(-3)
A 		11.4
(3)
A 		0.6
(-2.8)
A 		6
(0.1)
A 		11
B 6.6
(3)
A 		1.2
(-2.8)
A 		1
(-3)
A 		1.1
(-2.9)
A 		6
C 0.6
(-3)
A 		1.7
(-0.7)
A 		2.7
(1.3)
A 		3.5
(3)
A 		3
avr 2.5
(-1.1) 		4.8
(3) 		1.4
(-3) 		3.5
(0.7) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.6
(-1.2)
A 		0.3
(-3)
A 		0.4
(-2.4)
A 		0.5
(-1.8)
A 		1.1
(1.8)
A 		1.3
(3)
A 		1
B 1
(-2.3)
A 		5
(1.9)
A 		5.7
(2.6)
A 		4
(0.8)
A 		0.3
(-3)
A 		6.1
(3)
A 		6
C 2.6
(-1.6)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.9
(-2.7)
A 		1
(-2.6)
A 		9.6
(3)
A 		9
avr 1.4
(-2.3) 		1.9
(-1.7) 		2.2
(-1.3) 		1.8
(-1.8) 		0.8
(-3) 		5.7
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179921_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5051
Sequence Type Exemplar sequence
Representative Public ID M01D1.9 NCBI
Target Description M01D1.9 /REP_DB=WormBase Gene ID /WP=CE12258 /TR=O17231 /GB=AAB71000.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061498(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061498 NCBI Caenorhabditis elegans M01D1.9 (M01D1.9) mRNA, complete cds. 11/11 None
GENEFINDER00000029300 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1048919:1049827:-1 11/11 None
M01D1.9 ENSEMBL cdna:known chromosome:CEL140:II:1048917:1049909:-1 gene:M01D1.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1048917-1049826(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M01D1.9
Entrez Gene 173487 Entrez gene
SwissProt O17231 EMBL-EBI
WormBase CE12258 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71000 Hypothetical protein M01D1.9 [Caenorhabditis elegans] ref|NP_493899.1| M01D1.9 [Caenorhabditis elegans] 1.0E-164
blast AAK84545 Hypothetical protein M01D1.10 [Caenorhabditis elegans] ref|NP_493897.1| M01D1.10 [Caenorhabditis elegans] 8.0E-45
blast AAB95030 Hypothetical protein K05F6.9 [Caenorhabditis elegans] ref|NP_493999.1| K05F6.9 [Caenorhabditis elegans] 2.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.0E-5
Sequence
Target Sequence 
>C. ELEGANS:179921_S_AT
gttacagcgtacaatctacttcaaacgagaatattttctgtaccacaatttgatgtgagg
agcttcttaaatcactttctgtctataatcagcccatcgaacattgatttgtttcacttt
ccagtgtacaatgagtttgacgaagcccaattcaaatcactcagtgaatgcttggaaagt
catgagatttataaccttcatgtttattggaaattcgaaatggatccctttttcaaagta
atcaatgcattcttacctaccaagcaccttaaaatacatcccacctttcatcgaacacta
acctcgtttcaaaagctctcactaaaacgaattttgactcagaaatttcaaatactttct
atcttccaaatcgacatctcactggatgacctgcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTACAGCGTACAATCTACTTCAAA 189 447 250 Antisense
GGAGCTTCTTAAATCACTTTCTGTC 281 521 308 Antisense
GTCTATAATCAGCCCATCGAACATT 401 469 330 Antisense
GATTTGTTTCACTTTCCAGTGTACA 296 419 355 Antisense
GAAGCCCAATTCAAATCACTCAGTG 2 345 391 Antisense
ATGCATTCTTACCTACCAAGCACCT 304 43 494 Antisense
AAGCACCTTAAAATACATCCCACCT 416 149 511 Antisense
ACCTTTCATCGAACACTAACCTCGT 348 87 532 Antisense
TAACCTCGTTTCAAAAGCTCTCACT 284 639 548 Antisense
TCTATCTTCCAAATCGACATCTCAC 147 615 607 Antisense
GACATCTCACTGGATGACCTGCTTC 221 369 622 Antisense
Sequence Source Affymetrix Proprietary Database