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[179920_at]

Description K05F6.3 /REP_DB=WormBase Gene ID /WP=CE17161 /TR=O44864 /GB=AAB95032.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 22.2
(-1.7)
A 		10.1
(-3)
A 		45.9
(1)
A 		64.3
(3)
P 		54
B 3
(-3)
A 		24.3
(0.3)
A 		41.7
(3)
A 		27.1
(0.7)
A 		39
C 36
(-1.8)
A 		88.6
(1)
P 		13.4
(-3)
A 		125.7
(3)
P 		112
avr 20.4
(-3) 		41
(-0.6) 		33.7
(-1.5) 		72.4
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 61
(3)
A 		16.5
(-1.9)
A 		49.6
(1.7)
A 		6.4
(-3)
A 		16.7
(-1.9)
A 		30.9
(-0.3)
A 		55
B 17.8
(-3)
A 		46.2
(3)
A 		37.6
(1.2)
A 		34.2
(0.5)
A 		24.8
(-1.5)
A 		46.3
(3)
A 		29
C 9.7
(-3)
A 		27.8
(-1.2)
A 		11.3
(-2.8)
A 		70.4
(3)
A 		26.2
(-1.4)
A 		34.9
(-0.5)
A 		61
avr 29.5
(-0.2) 		30.2
(0.1) 		32.8
(1.1) 		37
(2.8) 		22.6
(-3) 		37.4
(3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 8.1
(0.6)
A 		2.2
(-3)
A 		12
(3)
A 		9.4
(1.4)
P 		10
B 1
(-3)
A 		6
(0.4)
A 		9.7
(3)
A 		5.8
(0.3)
A 		9
C 11.9
(-0.9)
A 		25.5
(3)
P 		4.7
(-3)
A 		21.2
(1.8)
P 		21
avr 7
(-3) 		11.2
(1.9) 		8.8
(-0.9) 		12.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 11.2
(3)
A 		5.9
(-0.3)
A 		10.8
(2.8)
A 		1.6
(-3)
A 		5.1
(-0.8)
A 		7.5
(0.7)
A 		10
B 6.2
(-3)
A 		15.4
(2)
A 		9.1
(-1.4)
A 		9.1
(-1.4)
A 		10.1
(-0.9)
A 		17.3
(3)
A 		11
C 3.6
(-2.6)
A 		8.5
(-0)
A 		2.9
(-3)
A 		14.2
(3)
A 		8.5
(-0)
A 		11.7
(1.7)
A 		11
avr 7
(-3) 		9.9
(0.3) 		7.6
(-2.3) 		8.3
(-1.5) 		7.9
(-2) 		12.2
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179920_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5016
Sequence Type Exemplar sequence
Representative Public ID K05F6.3 NCBI
Target Description K05F6.3 /REP_DB=WormBase Gene ID /WP=CE17161 /TR=O44864 /GB=AAB95032.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061593(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061593 NCBI Caenorhabditis elegans K05F6.3 (K05F6.3) mRNA, complete cds. 11/11 None
K05F6.3 ENSEMBL cdna:known chromosome:CEL140:II:1550881:1553308:1 gene:K05F6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1550879-1553307(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K05F6.3
Entrez Gene 187033 Entrez gene
SwissProt O44864 EMBL-EBI
WormBase CE17161 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95032 Hypothetical protein K05F6.3 [Caenorhabditis elegans] ref|NP_493994.1| K05F6.3 [Caenorhabditis elegans] 0.0
blast AAB95029 Hypothetical protein K05F6.1 [Caenorhabditis elegans] ref|NP_493998.1| K05F6.1 [Caenorhabditis elegans] 2.0E-44
blast AAB95024 Hypothetical protein K05F6.4 [Caenorhabditis elegans] ref|NP_493992.1| K05F6.4 [Caenorhabditis elegans] 1.0E-37
Sequence
Target Sequence 
>C. ELEGANS:179920_AT
tgtatctccctactttccaagaaaacaatggattccgccagagagttctgcaatttcaat
cgactgaattttaaaatctcgatttccaatcgagtatgccttgaagttggtgttcctcgt
tttggaaaaattgcatgtacattcgaaagcggaaacgttattatcaacacatatattttc
gattcttcaaaaagtaaatttgttgtttctgcgccgcagtttaatttgaaaaactggctg
aaacagcttctctacatctttggctcttcaaaaatcgattctgtggaatttttccgcttc
gatgaggaattccaaaaaacgcaattccatgtgctgaaggactctttaaccgggatgaaa
attgtacatctttgcatacaatgtgccaaccaaatgttgagttccgccgaatttatgaac
gcattcctaccaaccgattggctcaccttgcaggaccgccaaccattgacttcctcccaa
ctaatgacactgagccaagctatgttgcagaatatagaaaaaattaacttatcaatcaac
gtgccgttgaacaatctacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTATCTCCCTACTTTCCAAGAAAA 131 561 943 Antisense
GGATTCCGCCAGAGAGTTCTGCAAT 377 509 972 Antisense
ATGCCTTGAAGTTGGTGTTCCTCGT 19 41 1038 Antisense
TCTGCGCCGCAGTTTAATTTGAAAA 470 609 1150 Antisense
AAACAGCTTCTCTACATCTTTGGCT 358 129 1183 Antisense
GATTCTGTGGAATTTTTCCGCTTCG 661 431 1219 Antisense
CAACCAAATGTTGAGTTCCGCCGAA 191 187 1329 Antisense
TTTATGAACGCATTCCTACCAACCG 27 673 1354 Antisense
CTTCCTCCCAACTAATGACACTGAG 574 219 1412 Antisense
GACACTGAGCCAAGCTATGTTGCAG 446 367 1428 Antisense
CAACGTGCCGTTGAACAATCTACTA 390 183 1479 Antisense
Sequence Source Affymetrix Proprietary Database