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[179919_at]

Description B0286.2 /REP_DB=WormBase Gene ID /WP=CE23504 /TR=Q10922 /GB=AAA80689.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 24.3
(-1.7)
A 		9.5
(-3)
A 		20.2
(-2.1)
A 		79
(3)
A 		70
B 59.1
(3)
A 		21
(-1.4)
A 		7
(-3)
A 		28.7
(-0.5)
A 		52
C 5.1
(-3)
A 		23.1
(2.8)
A 		23.6
(3)
A 		9.6
(-1.5)
A 		19
avr 29.5
(0.4) 		17.9
(-2.7) 		16.9
(-3) 		39.1
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 35.2
(0.7)
A 		43.4
(1.9)
A 		23.4
(-1)
A 		21.6
(-1.2)
A 		51.1
(3)
A 		9.4
(-3)
A 		42
B 47.6
(3)
A 		11.2
(-3)
A 		32.8
(0.6)
A 		22.6
(-1.1)
A 		35.5
(1)
A 		39.9
(1.7)
A 		36
C 8.1
(-3)
A 		64.4
(3)
A 		39.8
(0.4)
A 		34.6
(-0.2)
A 		23.4
(-1.4)
A 		28.6
(-0.8)
A 		56
avr 30.3
(-1.1) 		39.7
(3) 		32
(-0.4) 		26.3
(-2.9) 		36.7
(1.7) 		26
(-3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 8.8
(1.2)
A 		2.1
(-3)
A 		5.3
(-1)
A 		11.6
(3)
A 		10
B 18.8
(3)
A 		5.2
(-1.7)
A 		1.6
(-3)
A 		6.1
(-1.4)
A 		17
C 1.7
(-2.9)
A 		6.6
(1.5)
A 		8.2
(3)
A 		1.6
(-3)
A 		7
avr 9.8
(3) 		4.6
(-3) 		5
(-2.5) 		6.4
(-0.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 6.5
(-1.1)
A 		15.4
(3)
A 		5.1
(-1.7)
A 		5.5
(-1.5)
A 		15.4
(3)
A 		2.3
(-3)
A 		13
B 16.6
(3)
A 		3.7
(-3)
A 		8
(-1)
A 		6
(-1.9)
A 		14.4
(2)
A 		14.9
(2.2)
A 		13
C 3
(-3)
A 		19.6
(3)
A 		10.1
(-0.4)
A 		7
(-1.6)
A 		7.6
(-1.3)
A 		9.6
(-0.6)
A 		17
avr 8.7
(-0.8) 		12.9
(3) 		7.7
(-1.7) 		6.2
(-3) 		12.5
(2.6) 		8.9
(-0.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179919_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5015
Sequence Type Exemplar sequence
Representative Public ID B0286.2 NCBI
Target Description B0286.2 /REP_DB=WormBase Gene ID /WP=CE23504 /TR=Q10922 /GB=AAA80689.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026720(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026720 NCBI Caenorhabditis elegans B0286.6 (B0286.6) mRNA, complete cds. 11/11 None
SNAP00000035725 ENSEMBL cdna:SNAP chromosome:CEL140:II:4368256:4369612:1 11/11 None
GENEFINDER00000035731 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4368256:4369612:1 11/11 None
B0286.6 ENSEMBL cdna:known chromosome:CEL140:II:4368484:4369612:1 gene:B0286.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4359778-4369611(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0286.6
Entrez Gene 3565941 Entrez gene
SwissProt Q6AHP9 EMBL-EBI
WormBase CE36969 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4263 chymotrypsin activity inferred from electronic annotation QuickGO AmiGO
4295 trypsin activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAT81211 Hypothetical protein B0286.6 [Caenorhabditis elegans] ref|NP_001021891.1| B0286.6 [Caenorhabditis elegans] 1.0E-159
blast T15308 hypothetical protein B0286.2 - Caenorhabditis elegans 1.0E-144
blast T15308 hypothetical protein B0286.2 - Caenorhabditis elegans 1.0E-143
blast CAE60129 Hypothetical protein CBG03674 [Caenorhabditis briggsae] 1.0E-141
Sequence
Target Sequence 
>C. ELEGANS:179919_AT
aatgtgacatgtgcggttccagagatgtgtaagggattgcataggaaggatatgttcaag
ccactggcgataaagtcgctctacatccgaaaaggctatgtcggagatggttgcattgat
cgagaatcattcaacgacatcgccgtgttcgaattggaagaacccatcgaattctcaaaa
gacatattcccagcctgtcttccatctgctccaaagatcccgaggatcagagaaaccgga
tataagctttttggttatggaagagatccttcggatagtgttttggagtctggaaagttg
aaatcgctatactcgtttgttgcggagtgctccgacgatttcccatatggcggggtgtat
tgtacgtcggcagtgaatagaggattgtcttgtgatggtgacagtggctcgggagttgtc
cgaacatcggacactcgaaatgttcaagttctcgtaggtgttttgtcagccggaatgcct
tgtccagaactctacgatacccataatcgtcaacgtcagcaacggagacagctgactcaa
gagactgatcttctcgtggatgtctcggcacacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGTGACATGTGCGGTTCCAGAGA 329 163 3751 Antisense
AAGGATATGTTCAAGCCACTGGCGA 169 161 3796 Antisense
GCGATAAAGTCGCTCTACATCCGAA 518 287 3817 Antisense
CATTCAACGACATCGCCGTGTTCGA 577 215 3878 Antisense
TGAAATCGCTATACTCGTTTGTTGC 158 573 4049 Antisense
CTCCGACGATTTCCCATATGGCGGG 488 233 4080 Antisense
ATGGCGGGGTGTATTGTACGTCGGC 245 3 4097 Antisense
GTGGCTCGGGAGTTGTCCGAACATC 90 493 4154 Antisense
GTAGGTGTTTTGTCAGCCGGAATGC 626 455 4204 Antisense
GCCTTGTCCAGAACTCTACGATACC 263 281 4227 Antisense
TTCTCGTGGATGTCTCGGCACACGT 563 691 4301 Antisense
Sequence Source Affymetrix Proprietary Database