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[179918_at]

Description F35A5.1 /REP_DB=WormBase Gene ID /WP=CE04485 /TR=Q20007 /GB=AAB52641.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 31      4grp_total > 29      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 9.7
(-2.4)
A 		41.8
(1.5)
A 		4.5
(-3)
A 		53.7
(3)
A 		49
B 64.2
(3)
A 		50.2
(1.5)
A 		8
(-3)
A 		47.5
(1.2)
A 		56
C 65.5
(3)
A 		16.5
(-1.9)
A 		6.1
(-3)
A 		22.2
(-1.4)
A 		59
avr 46.5
(3) 		36.2
(1.5) 		6.2
(-3) 		41.1
(2.2) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 9
(-2.9)
A 		29.5
(-0.3)
A 		11.6
(-2.6)
A 		54.6
(3)
A 		8.3
(-3)
A 		18.1
(-1.7)
A 		46
B 23
(0.7)
A 		10.9
(-1.4)
A 		36.5
(3)
A 		8.1
(-1.9)
A 		11.5
(-1.3)
A 		1.8
(-3)
A 		35
C 17.2
(-0.5)
A 		34.5
(2.7)
A 		36.2
(3)
A 		3.8
(-2.9)
A 		17
(-0.5)
A 		3.2
(-3)
A 		33
avr 16.4
(-0.4) 		25
(2.1) 		28.1
(3) 		22.2
(1.3) 		12.3
(-1.6) 		7.7
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 3.5
(-1.3)
A 		9.1
(3)
A 		1.2
(-3)
A 		7.9
(2.1)
A 		8
B 20.5
(3)
A 		12.4
(0.4)
A 		1.9
(-3)
A 		10.1
(-0.4)
A 		19
C 21.7
(3)
A 		4.7
(-2.2)
A 		2.1
(-3)
A 		3.7
(-2.5)
A 		20
avr 15.2
(3) 		8.7
(0.1) 		1.7
(-3) 		7.2
(-0.6) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.7
(-3)
A 		10.5
(1.4)
A 		2.5
(-2.6)
A 		13.8
(3)
A 		2.5
(-2.6)
A 		4.4
(-1.7)
A 		12
B 8
(2.3)
A 		3.6
(-0.9)
A 		8.9
(3)
A 		2.2
(-1.9)
A 		4.7
(-0.1)
A 		0.7
(-3)
A 		8
C 6.4
(0.5)
A 		10.5
(3)
A 		9.2
(2.2)
A 		0.8
(-3)
A 		5.5
(-0.1)
A 		1.1
(-2.8)
A 		10
avr 5.4
(0.2) 		8.2
(3) 		6.9
(1.7) 		5.6
(0.4) 		4.2
(-0.9) 		2.1
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179918_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18433
Sequence Type Exemplar sequence
Representative Public ID F35A5.1 NCBI
Target Description F35A5.1 /REP_DB=WormBase Gene ID /WP=CE04485 /TR=Q20007 /GB=AAB52641.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076261(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076261 NCBI Caenorhabditis elegans F35A5.1 (F35A5.1) mRNA, complete cds. 11/11 None
F35A5.1 ENSEMBL cdna:known chromosome:CEL140:X:3807449:3811356:1 gene:F35A5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3807449-3811339(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35A5.1
Entrez Gene 259699 Entrez gene
SwissProt Q20007 EMBL-EBI
WormBase CE04485 Wormbase
Functional Annotations
Ortholog
ID Title Organism
MOE430A:1424532_AT YLP motif containing 1 mm
MOUSE430A_2:1424532_AT YLP motif containing 1 mm
MOUSE430_2:1424532_AT YLP motif containing 1 mm
MG-U74AV2:100413_AT YLP motif containing 1 mm
MG-U74CV2:138505_AT YLP motif containing 1 mm
MOE430B:1443773_AT YLP motif containing 1 mm
MOUSE430_2:1443773_AT YLP motif containing 1 mm
MU19KSUBC:TC36122_AT Nuclear protein ZAP mm
MU19KSUBC:TC36122_G_AT Nuclear protein ZAP mm
Protein Similarities
Method ID Description E-Value
blast AAB52641 Hypothetical protein F35A5.1 [Caenorhabditis elegans] ref|NP_508662.1| F35A5.1 [Caenorhabditis elegans] 1.0E-151
blast CAE68488 Hypothetical protein CBG14291 [Caenorhabditis briggsae] 4.0E-55
blast AAA81138 Hypothetical protein K03C7.1 [Caenorhabditis elegans] ref|NP_508663.2| K03C7.1 [Caenorhabditis elegans] 5.0E-19
Sequence
Target Sequence 
>C. ELEGANS:179918_AT
ctgtttcagcgccagaaccggaaaagaagacaccagttcttgcgaaaaaagcaccaacga
agcctgctacaaaaccggattcagaagcagcagcggatccggttagtggtccaacatcta
aagatccgaaactcagcaaaaaagcaccggtggaaaaaccgaaaccgactactgatccaa
aagatgacaaactaaaaccttcgccagctaaaaaacctgagaaggcaccggagccggcag
caccgaaaaaatggaaacccgtctgggatgatgatccggatgaaccagaagcagatttca
cagttccagcaccaagtaaaaaaccggatactgaagatccagcagaccctctcggtggac
ctaaaacaaaagatccaaaactgaacaaaaaagcaccagctgaaaagccaactgaaaaac
ccaaaccaaaagaagtgtcaaaagaaccaccgaaaccaacagagccacctaaaccagctg
cgccgaagaaatggaaaccaccatgggaagatgatccagatgagccagaagctgatttca
caatgccggctccaaagaaacctgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGTTTCAGCGCCAGAACCGGAAAA 598 239 3212 Antisense
GAAGCCTGCTACAAAACCGGATTCA 353 345 3270 Antisense
ATTCAGAAGCAGCAGCGGATCCGGT 710 9 3290 Antisense
CGGATCCGGTTAGTGGTCCAACATC 419 243 3305 Antisense
CCGAAACCGACTACTGATCCAAAAG 56 263 3370 Antisense
TGACAAACTAAAACCTTCGCCAGCT 533 569 3396 Antisense
TGAGAAGGCACCGGAGCCGGCAGCA 260 569 3429 Antisense
GAAACCCGTCTGGGATGATGATCCG 105 359 3465 Antisense
GAAGCAGATTTCACAGTTCCAGCAC 421 341 3499 Antisense
CCAACAGAGCCACCTAAACCAGCTG 71 277 3667 Antisense
AATGCCGGCTCCAAAGAAACCTGAC 307 165 3753 Antisense
Sequence Source Affymetrix Proprietary Database