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[179917_at]

Description T05C1.6 /REP_DB=WormBase Gene ID /WP=CE02864 /TR=Q22222 /GB=AAA68394.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_high_8_8 > 26      6grp_highest_nonorm > 60      6grp_total > 24      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 280
1 2 3 4 range
A 574.8
(3)
P 		377.2
(-1.3)
P 		300.2
(-3)
A 		453.4
(0.3)
P 		275
B 560.7
(3)
P 		419.2
(-0.4)
P 		312
(-3)
M 		397.7
(-0.9)
P 		249
C 580.3
(3)
P 		327.9
(-2.6)
A 		310.1
(-3)
P 		397.1
(-1.1)
P 		270
avr 571.9
(3) 		374.8
(-1.5) 		307.4
(-3) 		416.1
(-0.5) 		265

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 365
1 2 3 4 5 6 range
A 359.4
(-0.2)
P 		457.9
(3)
P 		320.2
(-1.5)
P 		272.7
(-3)
P 		291
(-2.4)
P 		339
(-0.9)
P 		185
B 415.5
(1.8)
P 		366.1
(0.5)
P 		462
(3)
P 		327.8
(-0.4)
P 		227.5
(-3)
P 		247.6
(-2.5)
P 		235
C 592.1
(3)
P 		377.1
(-0.9)
P 		434.8
(0.1)
P 		392.9
(-0.6)
P 		305.5
(-2.2)
P 		261.4
(-3)
P 		331
avr 455.7
(3) 		400.4
(1.2) 		405.7
(1.3) 		331.1
(-1.1) 		274.7
(-3) 		282.7
(-2.7) 		181
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 209.3
(3)
P 		81.9
(-2.3)
P 		78.5
(-2.5)
A 		66.4
(-3)
P 		143
B 178.8
(3)
P 		103.5
(-1.2)
P 		72.3
(-3)
M 		84.7
(-2.3)
P 		107
C 192.1
(3)
P 		94.3
(-1.7)
A 		108.1
(-1)
P 		67
(-3)
P 		125
avr 193.4
(3) 		93.2
(-2) 		86.3
(-2.3) 		72.7
(-3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 66.3
(-3)
P 		162.8
(3)
P 		69.7
(-2.8)
P 		69.2
(-2.8)
P 		87.8
(-1.7)
P 		82.5
(-2)
P 		97
B 144.6
(3)
P 		121.9
(0.6)
P 		112.2
(-0.4)
P 		86.8
(-3)
P 		92.4
(-2.4)
P 		92.3
(-2.4)
P 		58
C 219.5
(3)
P 		115.1
(-1.5)
P 		110.7
(-1.6)
P 		79
(-3)
P 		98.9
(-2.2)
P 		87.5
(-2.6)
P 		141
avr 143.5
(3) 		133.3
(2.1) 		97.5
(-1.2) 		78.3
(-3) 		93
(-1.6) 		87.4
(-2.2) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179917_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5005
Sequence Type Exemplar sequence
Representative Public ID T05C1.6 NCBI
Target Description T05C1.6 /REP_DB=WormBase Gene ID /WP=CE02864 /TR=Q22222 /GB=AAA68394.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062394(11), NM_062395(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062394 NCBI Caenorhabditis elegans T05C1.4a (T05C1.4) mRNA, complete cds. 11/11 A 
NM_062395 NCBI Caenorhabditis elegans T05C1.4b (T05C1.4) mRNA, complete cds. 11/11 A 
T05C1.4a ENSEMBL cdna:known chromosome:CEL140:II:4491153:4505134:-1 gene:T05C1.4 11/11 A 
T05C1.4b ENSEMBL cdna:known chromosome:CEL140:II:4491388:4505134:-1 gene:T05C1.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173786 3 2 NM_062394 179917_at (11)
NM_062395 179917_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4500078-4505133(-) 100.0 100.0
Public Domain and Genome References
Ensembl T05C1.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO38602 Hypothetical protein T05C1.4a [Caenorhabditis elegans] ref|NP_494795.2| T05C1.4a [Caenorhabditis elegans] 0.0
blast AAO38603 Hypothetical protein T05C1.4b [Caenorhabditis elegans] ref|NP_494796.2| T05C1.4b [Caenorhabditis elegans] 0.0
blast T16812 hypothetical protein T05C1.6 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 1.6E-4
Pfam IPR005559 EMBL-EBI CG-1 domain 7.0E-18
Pfam IPR002909 EMBL-EBI Cell surface receptor IPT/TIG 4.5E-4
Sequence
Target Sequence 
>C. ELEGANS:179917_AT
attctactcaacagctacacgtggaaatcgcaatggacacagacgtccatgttccggatt
ctccaaaaatggcaaggctattccatgcagttacaagtcctggaattgtggtgccaccta
atgcaagagctcggatggcagatttggctcggcagatcattgaagcattgccagatagaa
tcaagaggaattcagaagtttctatgtgtcctgatgaagaagatcccggacagaatcacc
atggcggagttgagccgatgttctatcaacaggcgagctgctcaatgtctactgattctc
caaatatgatggatgattattttgatatgatggctacggagactagaaatgatatattca
cggagccccgttcaacagaaaccaccgaaacaagtgcgagcaaatctgcacagttgttcg
ccacacactgcaatttctttgacgatcgttcatttgcgtcgtcgtcgacaagagcaaaca
cgttcgaaagtgatacactggactttgacaaagacctcggcgagttcttcacaatccatg
tggatcgattcgtcgacccaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTACTCAACAGCTACACGTGGA 482 9 2264 Antisense
GTCCATGTTCCGGATTCTCCAAAAA 451 475 2308 Antisense
AGTCCTGGAATTGTGGTGCCACCTA 294 61 2359 Antisense
GCTCGGATGGCAGATTTGGCTCGGC 289 299 2392 Antisense
GCTGCTCAATGTCTACTGATTCTCC 554 297 2540 Antisense
TATTCACGGAGCCCCGTTCAACAGA 13 665 2618 Antisense
GCAAATCTGCACAGTTGTTCGCCAC 627 317 2663 Antisense
TCGCCACACACTGCAATTTCTTTGA 203 599 2681 Antisense
CGTTCATTTGCGTCGTCGTCGACAA 136 247 2710 Antisense
AAGACCTCGGCGAGTTCTTCACAAT 201 153 2774 Antisense
TGTGGATCGATTCGTCGACCCAATC 50 555 2802 Antisense
Sequence Source Affymetrix Proprietary Database