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[179916_at]

Description ZK380.2 /REP_DB=WormBase Gene ID /WP=CE18452 /TR=O61762 /GB=AAC17011.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 2.2
(-3)
A 		42.5
(0.7)
A 		2.2
(-3)
A 		67.3
(3)
A 		65
B 1.8
(-3)
A 		4
(-0.2)
A 		6.5
(3)
A 		1.8
(-3)
A 		5
C 2.3
(-2.9)
A 		27.2
(0.6)
A 		1.8
(-3)
A 		44.7
(3)
A 		43
avr 2.1
(-3) 		24.6
(0.8) 		3.5
(-2.8) 		37.9
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 55.6
(3)
A 		2
(-3)
A 		2.2
(-3)
A 		19.3
(-1)
A 		29.7
(0.1)
A 		1.8
(-3)
A 		54
B 9.6
(-1.6)
A 		5.6
(-2.3)
A 		1.9
(-3)
A 		33.9
(3)
A 		2.6
(-2.9)
A 		2.6
(-2.9)
A 		32
C 7.6
(3)
A 		5
(0.5)
A 		5.6
(1.1)
A 		1.4
(-3)
A 		2.3
(-2.1)
A 		1.7
(-2.7)
A 		6
avr 24.3
(3) 		4.2
(-2.4) 		3.2
(-2.7) 		18.2
(1.4) 		11.5
(-0.4) 		2
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.8
(-2.9)
A 		9.2
(2.5)
A 		0.6
(-3)
A 		9.9
(3)
A 		9
B 0.6
(-1.9)
A 		1
(0.3)
A 		1.5
(3)
A 		0.4
(-3)
A 		1
C 0.8
(-2.8)
A 		7.8
(3)
A 		0.6
(-3)
A 		7.5
(2.8)
A 		7
avr 0.7
(-3) 		6
(3) 		0.9
(-2.8) 		5.9
(2.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 10.2
(3)
A 		0.7
(-2.8)
A 		0.5
(-2.9)
A 		4.9
(-0.2)
A 		9
(2.3)
A 		0.4
(-3)
A 		10
B 3.3
(-1)
A 		1.9
(-2)
A 		0.5
(-3)
A 		9
(3)
A 		1
(-2.6)
A 		1
(-2.6)
A 		9
C 2.8
(3)
A 		1.5
(-0.1)
A 		1.4
(-0.4)
A 		0.3
(-3)
A 		0.7
(-2)
A 		0.6
(-2.3)
A 		3
avr 5.4
(3) 		1.4
(-2.1) 		0.8
(-2.9) 		4.7
(2.1) 		3.6
(0.7) 		0.7
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179916_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18067
Sequence Type Exemplar sequence
Representative Public ID ZK380.2 NCBI
Target Description ZK380.2 /REP_DB=WormBase Gene ID /WP=CE18452 /TR=O61762 /GB=AAC17011.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075901(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075901 NCBI Caenorhabditis elegans ZK380.2 (ZK380.2) mRNA, complete cds. 11/11 None
SNAP00000026594 ENSEMBL cdna:SNAP chromosome:CEL140:X:1631557:1635722:1 11/11 None
GENEFINDER00000026601 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1631557:1635722:1 9/11 None
ZK380.2 ENSEMBL cdna:known chromosome:CEL140:X:1630610:1635722:1 gene:ZK380.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1630905-1635722(+) 93.01 98.25
Public Domain and Genome References
Gene Title
Ensembl ZK380.2
Entrez Gene 191304 Entrez gene
SwissProt O61762 EMBL-EBI
WormBase CE18452 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17011 Hypothetical protein ZK380.2 [Caenorhabditis elegans] ref|NP_508302.1| ZK380.2 [Caenorhabditis elegans] 0.0
blast AAC17011 Hypothetical protein ZK380.2 [Caenorhabditis elegans] ref|NP_508302.1| ZK380.2 [Caenorhabditis elegans] 1.0E-151
blast AAM15584 Hypothetical protein K02H11.9 [Caenorhabditis elegans] ref|NP_741509.1| K02H11.9 [Caenorhabditis elegans] 1.0E-21
blast AAM15584 Hypothetical protein K02H11.9 [Caenorhabditis elegans] ref|NP_741509.1| K02H11.9 [Caenorhabditis elegans] 6.0E-19
blast T33313 hypothetical protein K02H11.6 - Caenorhabditis elegans 1.0E-15
blast AAM15584 Hypothetical protein K02H11.9 [Caenorhabditis elegans] ref|NP_741509.1| K02H11.9 [Caenorhabditis elegans] 3.0E-13
blast T33313 hypothetical protein K02H11.6 - Caenorhabditis elegans 3.0E-13
Sequence
Target Sequence 
>C. ELEGANS:179916_AT
ggctacatcgaaccacgagtactgcaataaccaggaaaaagacagaaaaattaggaacct
tgaagctcaactcaacgacgctgtagctagaaataaggccacatcaaaccgcgagttcta
caatagctgggaaaaagacaaaaaaattgagaatcttaaaagtcagctccacaacgctca
agctagaaatgcggccatatcggaccgcgagttctataatagccaggaaaaagacagaaa
aattgagaagctcaaacatagcttctgtattaaccatcaattttcagagcatattgagaa
gctgaagttggaacacaagtcgtatgttgaatcattaaatgatctaaaatacatgttttc
cgaggcacagtatgaattgctggatagtttggacgtcaaaccacgggcactgtgtgatta
ttatcgggcgaggtttgacctcatacatttttattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTACATCGAACCACGAGTACTGC 58 539 891 Antisense
GAAGCTCAACTCAACGACGCTGTAG 281 341 952 Antisense
ATAAGGCCACATCAAACCGCGAGTT 693 25 983 Antisense
AACCGCGAGTTCTACAATAGCTGGG 487 143 997 Antisense
GAATCTTAAAAGTCAGCTCCACAAC 486 327 1041 Antisense
TCAGCTCCACAACGCTCAAGCTAGA 520 625 1053 Antisense
GAAATGCGGCCATATCGGACCGCGA 501 361 1076 Antisense
CGGACCGCGAGTTCTATAATAGCCA 688 241 1091 Antisense
AATACATGTTTTCCGAGGCACAGTA 703 169 1238 Antisense
ACGTCAAACCACGGGCACTGTGTGA 325 93 1283 Antisense
GGTTTGACCTCATACATTTTTATTC 126 505 1322 Antisense
Sequence Source Affymetrix Proprietary Database