[Home] | [Total List]

[179915_at]

Description Y63D3A.3 /REP_DB=WormBase Gene ID /WP=CE25528 /TR=Q9NA67 /GB=CAB63397.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 35      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 13.9
(-2)
A 		13
(-2.1)
A 		7.1
(-3)
A 		46.5
(3)
A 		39
B 2
(-3)
A 		37.8
(3)
A 		6.2
(-2.3)
A 		14.1
(-1)
A 		36
C 4
(-2.8)
A 		65.2
(3)
A 		6.4
(-2.6)
A 		2.1
(-3)
A 		63
avr 6.6
(-3) 		38.7
(3) 		6.6
(-3) 		20.9
(-0.3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 57
(3)
A 		37.8
(0.9)
A 		22.6
(-0.7)
A 		3.8
(-2.8)
A 		1.6
(-3)
A 		4.5
(-2.7)
A 		55
B 42.4
(3)
A 		29.9
(1.2)
A 		23.9
(0.3)
A 		2.5
(-2.8)
A 		1.2
(-3)
A 		34.1
(1.8)
A 		41
C 33.3
(2.4)
A 		32.8
(2.3)
A 		31
(2)
A 		36.8
(3)
A 		16.5
(-0.5)
A 		2.2
(-3)
A 		35
avr 44.2
(3) 		33.5
(1.3) 		25.8
(0.1) 		14.4
(-1.7) 		6.4
(-3) 		13.6
(-1.9) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 5.1
(0.9)
A 		2.8
(-1.9)
A 		1.9
(-3)
A 		6.8
(3)
A 		5
B 0.7
(-3)
A 		9.3
(3)
A 		1.4
(-2.5)
A 		3
(-1.4)
A 		9
C 1.3
(-2.7)
A 		18.8
(3)
A 		2.2
(-2.4)
A 		0.4
(-3)
A 		18
avr 2.4
(-2.6) 		10.3
(3) 		1.8
(-3) 		3.4
(-1.9) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 10.5
(1.7)
A 		13.4
(3)
A 		4.9
(-1)
A 		1
(-2.8)
A 		0.5
(-3)
A 		1.1
(-2.7)
A 		13
B 14.8
(3)
A 		9.9
(0.9)
A 		5.8
(-0.8)
A 		0.7
(-2.9)
A 		0.5
(-3)
A 		12.7
(2.1)
A 		14
C 12.3
(3)
A 		10
(1.8)
A 		7.9
(0.7)
A 		7.4
(0.5)
A 		5.3
(-0.6)
A 		0.7
(-3)
A 		12
avr 12.5
(3) 		11.1
(2.2) 		6.2
(-0.6) 		3
(-2.5) 		2.1
(-3) 		4.8
(-1.4) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179915_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.960
Sequence Type Exemplar sequence
Representative Public ID Y63D3A.3 NCBI
Target Description Y63D3A.3 /REP_DB=WormBase Gene ID /WP=CE25528 /TR=Q9NA67 /GB=CAB63397.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061058(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061058 NCBI Caenorhabditis elegans Y63D3A.3 (Y63D3A.3) mRNA, complete cds. 11/11 None
GENEFINDER00000002957 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14097124:14105477:1 11/11 None
SNAP00000002946 ENSEMBL cdna:SNAP chromosome:CEL140:I:14097146:14100818:1 11/11 None
Y63D3A.3 ENSEMBL cdna:known chromosome:CEL140:I:14096212:14097976:1 gene:Y63D3A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14096142-14097907(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y63D3A.3
Entrez Gene 190470 Entrez gene
SwissProt Q9NA67 EMBL-EBI
WormBase CE25528 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63397 Hypothetical protein Y63D3A.3 [Caenorhabditis elegans] ref|NP_493459.1| Y63D3A.3 [Caenorhabditis elegans] 0.0
blast CAB63397 Hypothetical protein Y63D3A.3 [Caenorhabditis elegans] ref|NP_493459.1| Y63D3A.3 [Caenorhabditis elegans] 1.0E-135
blast CAB63397 Hypothetical protein Y63D3A.3 [Caenorhabditis elegans] ref|NP_493459.1| Y63D3A.3 [Caenorhabditis elegans] 1.0E-106
blast AAK71385 Hypothetical protein M116.4 [Caenorhabditis elegans] ref|NP_501430.1| M116.4 [Caenorhabditis elegans] 4.0E-16
blast AAK18996 Hypothetical protein Y8A9A.5 [Caenorhabditis elegans] ref|NP_494653.1| Y8A9A.5 [Caenorhabditis elegans] 1.0E-15
blast AAC67486 Hypothetical protein F58E1.9 [Caenorhabditis elegans] ref|NP_494042.1| F58E1.9 [Caenorhabditis elegans] 7.0E-10
blast CAB04423 Hypothetical protein F49B2.1 [Caenorhabditis elegans] ref|NP_493499.1| F49B2.1 [Caenorhabditis elegans] 1.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0018
Sequence
Target Sequence 
>C. ELEGANS:179915_AT
tataagccggatattcaagcgttgaaagggattaaaatgagaactttgaagcttaggtac
caagaatcaattctgaaaatgtttgggacaagcgcggatcgcattgaattctccactata
aaaagtgcggagttggagaattccaaggacattttgattcagaactttgattatttgaag
ttcgacttcgaaggttccctgacagctgacaatttgatcggtatcaatggcaaggtggtg
aatatctgggctgctgacatcgagatgaaagatgtgaacatattcctgaaacactggctg
aaaggttcaaatccccgattggaaaaattgattctgaaaacttaccgcttggatacagat
ggaaattcagtggaggattcagtggctgaccttttccgggacttggattgtgagagcatt
gctgaatcgcaatttgaaattctacgcgacgacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATAAGCCGGATATTCAAGCGTTGA 533 659 385 Antisense
ATGTTTGGGACAAGCGCGGATCGCA 496 47 463 Antisense
GCGGATCGCATTGAATTCTCCACTA 400 293 478 Antisense
TCGACTTCGAAGGTTCCCTGACAGC 535 599 566 Antisense
GTTCCCTGACAGCTGACAATTTGAT 669 441 578 Antisense
GGTGGTGAATATCTGGGCTGCTGAC 263 499 618 Antisense
TCTGGGCTGCTGACATCGAGATGAA 151 609 629 Antisense
GATTCTGAAAACTTACCGCTTGGAT 523 429 714 Antisense
GAGGATTCAGTGGCTGACCTTTTCC 581 403 757 Antisense
GACCTTTTCCGGGACTTGGATTGTG 30 369 772 Antisense
AATTTGAAATTCTACGCGACGACGA 401 173 815 Antisense
Sequence Source Affymetrix Proprietary Database