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[179914_at]

Description F35E12.8 /REP_DB=WormBase Gene ID /WP=CE09923 /TR=O01983 /GB=CAB04278.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 17      4grp_highest_8_8 > 34      4grp_high_8_8 > 58      6grp_total > 07      4grp_total > 62      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 228
1 2 3 4 range
A 281.5
(3)
P 		183
(-1)
P 		245.8
(1.5)
P 		133.8
(-3)
P 		148
B 335.5
(3)
P 		264.4
(0.4)
P 		223.5
(-1.2)
P 		174.3
(-3)
P 		161
C 356.9
(3)
P 		275.1
(0.8)
P 		358.4
(3)
P 		130.2
(-3)
P 		228
avr 324.6
(3) 		240.8
(0.2) 		275.9
(1.4) 		146.1
(-3) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 323
1 2 3 4 5 6 range
A 252.5
(3)
P 		174.4
(0.3)
P 		160.7
(-0.2)
P 		119.6
(-1.6)
P 		79.9
(-3)
A 		123.6
(-1.5)
P 		173
B 379
(3)
P 		153.1
(-1.7)
P 		113.4
(-2.5)
P 		116.2
(-2.5)
P 		89.7
(-3)
P 		158.5
(-1.6)
P 		289
C 304.8
(3)
P 		113.1
(-1.6)
P 		93.3
(-2.1)
P 		138.6
(-1)
P 		55.6
(-3)
A 		88.3
(-2.2)
P 		249
avr 312.1
(3) 		146.9
(-1.2) 		122.5
(-1.8) 		124.8
(-1.7) 		75.1
(-3) 		123.5
(-1.8) 		237
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 102.5
(3)
P 		39.7
(-1.5)
P 		64.2
(0.2)
P 		19.6
(-3)
P 		83
B 107
(3)
P 		65.3
(-0.6)
P 		51.8
(-1.7)
P 		37.1
(-3)
P 		70
C 118.1
(2.6)
P 		79.1
(0.3)
P 		124.9
(3)
P 		22
(-3)
P 		103
avr 109.2
(3) 		61.4
(-0.5) 		80.3
(0.9) 		26.2
(-3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 46.6
(0.6)
P 		62
(3)
P 		35
(-1.3)
P 		30.3
(-2)
P 		24.1
(-3)
A 		30.1
(-2.1)
P 		38
B 131.9
(3)
P 		51
(-1.6)
P 		27.5
(-3)
P 		30.8
(-2.8)
P 		36.4
(-2.5)
P 		59.1
(-1.2)
P 		104
C 113
(3)
P 		34.5
(-2)
P 		23.7
(-2.6)
P 		27.9
(-2.4)
P 		18
(-3)
A 		29.6
(-2.3)
P 		95
avr 97.2
(3) 		49.2
(-1.1) 		28.7
(-2.8) 		29.7
(-2.7) 		26.2
(-3) 		39.6
(-1.9) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179914_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13715
Sequence Type Exemplar sequence
Representative Public ID F35E12.8 NCBI
Target Description F35E12.8 /REP_DB=WormBase Gene ID /WP=CE09923 /TR=O01983 /GB=CAB04278.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074004(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074004 NCBI Caenorhabditis elegans F35E12.8 (F35E12.8) mRNA, complete cds. 9/11 None
SNAP00000032237 ENSEMBL cdna:SNAP chromosome:CEL140:V:13751828:13753497:-1 9/11 None
F35E12.8 ENSEMBL cdna:known chromosome:CEL140:V:13751786:13754511:-1 gene:F35E12.8 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13751827-13754481(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35E12.8
Entrez Gene 179869 Entrez gene
SwissProt O01983 EMBL-EBI
WormBase CE32403 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02089 Hypothetical protein F35E12.8 [Caenorhabditis elegans] emb|CAB04278.2| Hypothetical protein F35E12.8 [Caenorhabditis elegans] ref|NP_506405.2| F35E12.8 [Caenorhabditis elegans] 0.0
blast CAE66250 Hypothetical protein CBG11494 [Caenorhabditis briggsae] 1.0E-120
blast CAE66250 Hypothetical protein CBG11494 [Caenorhabditis briggsae] 4.0E-94
blast CAB02085 Hypothetical protein F20G2.5 [Caenorhabditis elegans] ref|NP_506410.1| F20G2.5 [Caenorhabditis elegans] 1.0E-53
blast CAB02085 Hypothetical protein F20G2.5 [Caenorhabditis elegans] ref|NP_506410.1| F20G2.5 [Caenorhabditis elegans] 5.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 1.3E-25
Sequence
Target Sequence 
>C. ELEGANS:179914_AT
tatagttgttgatatctcggccttctactcagctgtaaaaattctagtagcaactgatgc
agtgcagaactcaatgcctcaaatgattccggcaaagctattcagtatggtaacactagg
cccagaactttcattgactttgtcttctactgctgataattggttaaccccttataatgg
aaggaaaggaagtattttctcatcatctctatggacacctgaagcaacatcaggatacaa
tcatacatttgtatcaactaatgtcatgacatttactttcaatattaaaaaggccattat
tcatcaggctggagaacagatgcatgttcaagttggactaccaggatttaaaccatcgag
tttgacattcactaacagtgtttcggatcaaagtcgacttgccaatggaacttatttaat
gattgaatacataggcgattcaacttcttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATAGTTGTTGATATCTCGGCCTTC 411 661 981 Antisense
CGGCCTTCTACTCAGCTGTAAAAAT 175 241 998 Antisense
GATGCAGTGCAGAACTCAATGCCTC 595 411 1036 Antisense
GATTCCGGCAAAGCTATTCAGTATG 423 433 1065 Antisense
GGTAACACTAGGCCCAGAACTTTCA 455 501 1089 Antisense
GACTTTGTCTTCTACTGCTGATAAT 174 373 1116 Antisense
GGAAGTATTTTCTCATCATCTCTAT 592 531 1168 Antisense
ATCATCTCTATGGACACCTGAAGCA 113 31 1182 Antisense
AAGGCCATTATTCATCAGGCTGGAG 285 161 1270 Antisense
GTTTCGGATCAAAGTCGACTTGCCA 622 449 1360 Antisense
TACATAGGCGATTCAACTTCTTCAT 449 641 1408 Antisense
Sequence Source Affymetrix Proprietary Database