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[179912_at]

Description T27A1.2 /REP_DB=WormBase Gene ID /WP=CE14207 /TR=O17273 /GB=AAB71043.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 15      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 4.7
(-2.1)
A 		3.7
(-3)
A 		5.4
(-1.4)
A 		10.1
(3)
A 		6
B 8.6
(3)
A 		2.7
(-2.6)
A 		4.3
(-1.1)
A 		2.3
(-3)
A 		6
C 9.2
(1.7)
A 		4.4
(-1.4)
A 		2
(-3)
A 		11.2
(3)
A 		9
avr 7.5
(2.4) 		3.6
(-3) 		3.9
(-2.6) 		7.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 3.5
(-1.8)
A 		6.9
(-0.1)
A 		13.1
(3)
A 		1.2
(-3)
A 		5.1
(-1)
A 		2.3
(-2.4)
A 		12
B 5.7
(1.3)
A 		3.7
(-1.1)
A 		2.1
(-3)
A 		7.1
(3)
A 		5.1
(0.6)
A 		6
(1.7)
A 		5
C 5.9
(0)
A 		8.2
(3)
A 		4.9
(-1.3)
A 		6.3
(0.5)
A 		3.6
(-3)
A 		3.6
(-3)
A 		5
avr 5
(-0.8) 		6.3
(2.1) 		6.7
(3) 		4.9
(-1) 		4.6
(-1.7) 		4
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.7
(3)
A 		0.8
(-3)
A 		1.4
(1)
A 		1.5
(1.7)
A 		1
B 2.7
(3)
A 		0.7
(-2.5)
A 		1
(-1.6)
A 		0.5
(-3)
A 		2
C 3.1
(3)
A 		1.3
(-1.5)
A 		0.7
(-3)
A 		1.9
(-0)
A 		2
avr 2.5
(3) 		0.9
(-3) 		1
(-2.6) 		1.3
(-1.5) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.6
(-2.3)
A 		2.5
(2.3)
A 		2.8
(3)
A 		0.3
(-3)
A 		1.5
(-0.1)
A 		0.6
(-2.3)
A 		3
B 2
(2.3)
A 		1.2
(-0.5)
A 		0.5
(-3)
A 		1.9
(1.9)
A 		2.1
(2.6)
A 		2.2
(3)
A 		2
C 2.2
(1.6)
A 		2.5
(3)
A 		1.3
(-2.5)
A 		1.3
(-2.5)
A 		1.2
(-3)
A 		1.2
(-3)
A 		1
avr 1.6
(-0.3) 		2.1
(3) 		1.5
(-1) 		1.2
(-3) 		1.6
(-0.3) 		1.3
(-2.3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179912_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5542
Sequence Type Exemplar sequence
Representative Public ID T27A1.2 NCBI
Target Description T27A1.2 /REP_DB=WormBase Gene ID /WP=CE14207 /TR=O17273 /GB=AAB71043.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061352(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061352 NCBI Caenorhabditis elegans T27A1.2 (T27A1.2) mRNA, complete cds. 11/11 None
SNAP00000021277 ENSEMBL cdna:SNAP chromosome:CEL140:II:520102:532226:-1 10/11 None
GENEFINDER00000021285 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:530895:533204:-1 11/11 None
T27A1.2 ENSEMBL cdna:known chromosome:CEL140:II:530895:533181:-1 gene:T27A1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:530894-533204(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T27A1.2
Entrez Gene 188963 Entrez gene
SwissProt O17273 EMBL-EBI
WormBase CE36023 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_493753 T27A1.2 [Caenorhabditis elegans] gb|AAB71043.2| Hypothetical protein T27A1.2 [Caenorhabditis elegans] 1.0E-172
blast NP_493753 T27A1.2 [Caenorhabditis elegans] gb|AAB71043.2| Hypothetical protein T27A1.2 [Caenorhabditis elegans] 1.0E-144
blast AAB71199 Hypothetical protein C24H12.1 [Caenorhabditis elegans] ref|NP_493736.1| C24H12.1 [Caenorhabditis elegans] 1.0E-126
blast AAB71199 Hypothetical protein C24H12.1 [Caenorhabditis elegans] ref|NP_493736.1| C24H12.1 [Caenorhabditis elegans] 1.0E-104
blast AAB71199 Hypothetical protein C24H12.1 [Caenorhabditis elegans] ref|NP_493736.1| C24H12.1 [Caenorhabditis elegans] 1.0E-89
blast AAB71207 Hypothetical protein C24H12.11 [Caenorhabditis elegans] ref|NP_493734.1| C24H12.11 [Caenorhabditis elegans] 4.0E-86
blast AAB71207 Hypothetical protein C24H12.11 [Caenorhabditis elegans] ref|NP_493734.1| C24H12.11 [Caenorhabditis elegans] 1.0E-70
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000021285 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:179912_AT
ggggaattcaaatccgcactgagtcatccattatttcggaaatgccattttgttaaagtt
ctcggcgagctatcgttcgttgacacagaagacgtggaattcatattgaagaatttcgat
ttgaaatttggattttcaaattgtagttttcaactagtcgggttcaacaaaaaactcata
aaactgttttacaatattccacggttggacttacgaagatgcccaaaattaacattagac
gatttgaaactgatgaattgcgaaacgattcgattcgattattttggtggattctcggga
atacaactaaactggcacattcaatactggtttgccggaaatatgtcaaaactacgaaga
tttcaattaaactactggccttatgagtggactgatgacttatgtgatggtttgccacac
tccgagtggaatccaaaacgtcgagcaagatatttctatgatgatctggaagtcgttgat
tgtttaaaaggacgcgatatcgaaagaagtgacggtctacttgcaactattttagtcgaa
tatgataccatgtactttctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGGAATTCAAATCCGCACTGAGTC 282 497 526 Antisense
CCGCACTGAGTCATCCATTATTTCG 438 263 539 Antisense
AAGTTCTCGGCGAGCTATCGTTCGT 290 157 581 Antisense
GAGCTATCGTTCGTTGACACAGAAG 257 389 592 Antisense
ACTGTTTTACAATATTCCACGGTTG 262 95 708 Antisense
CACGGTTGGACTTACGAAGATGCCC 346 197 725 Antisense
GATTATTTTGGTGGATTCTCGGGAA 703 427 802 Antisense
GCACATTCAATACTGGTTTGCCGGA 227 317 840 Antisense
AACTACTGGCCTTATGAGTGGACTG 223 139 895 Antisense
ATGGTTTGCCACACTCCGAGTGGAA 575 49 932 Antisense
GAATATGATACCATGTACTTTCTCA 32 327 1063 Antisense
Sequence Source Affymetrix Proprietary Database