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[179910_s_at]

Description F29A7.1 /REP_DB=WormBase Gene ID /WP=CE09772 /TR=O16212 /GB=AAB65271.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 47      4grp_total > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 24.2
(-3)
A 		30.3
(-2.5)
A 		54.2
(-0.5)
A 		96
(3)
P 		72
B 31.5
(1.4)
A 		8.3
(-3)
A 		22.8
(-0.2)
A 		39.9
(3)
A 		32
C 28.3
(-1.3)
A 		31.9
(-1)
A 		3.6
(-3)
A 		88.6
(3)
P 		85
avr 28
(-2.5) 		23.5
(-3) 		26.9
(-2.6) 		74.8
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 76.1
(3)
P 		9.1
(-3)
A 		32.3
(-0.9)
A 		46.1
(0.3)
A 		25.5
(-1.5)
A 		25.1
(-1.6)
A 		67
B 55.6
(3)
A 		47.2
(0.8)
A 		35.6
(-2.1)
A 		33.8
(-2.6)
A 		32.2
(-3)
P 		38.6
(-1.4)
M 		23
C 5.9
(-2.7)
A 		45
(0.7)
A 		21.5
(-1.3)
A 		31.8
(-0.4)
A 		2.4
(-3)
A 		71.5
(3)
P 		69
avr 45.9
(3) 		33.8
(0.2) 		29.8
(-0.7) 		37.2
(1) 		20
(-3) 		45.1
(2.8) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 8.8
(-1.3)
A 		6.6
(-3)
A 		14.2
(3)
A 		14
(2.8)
P 		8
B 10.1
(3)
A 		2
(-3)
A 		5.3
(-0.6)
A 		8.5
(1.8)
A 		8
C 9.4
(0.6)
A 		9.2
(0.5)
A 		1.2
(-3)
A 		14.9
(3)
P 		14
avr 9.4
(0.2) 		5.9
(-3) 		6.9
(-2.1) 		12.5
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 14
(3)
P 		3.2
(-3)
A 		7
(-0.9)
A 		11.7
(1.7)
A 		7.7
(-0.5)
A 		6.1
(-1.4)
A 		11
B 19.3
(3)
A 		15.7
(1)
A 		8.6
(-3)
A 		9
(-2.8)
A 		13.1
(-0.5)
P 		14.4
(0.3)
M 		11
C 2.2
(-2.6)
A 		13.7
(0.4)
A 		5.5
(-1.8)
A 		6.4
(-1.5)
A 		0.8
(-3)
A 		23.9
(3)
P 		23
avr 11.8
(0.7) 		10.9
(0) 		7
(-3) 		9
(-1.5) 		7.2
(-2.8) 		14.8
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179910_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5873
Sequence Type Exemplar sequence
Representative Public ID F29A7.1 NCBI
Target Description F29A7.1 /REP_DB=WormBase Gene ID /WP=CE09772 /TR=O16212 /GB=AAB65271.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061953(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061953 NCBI Caenorhabditis elegans F29A7.1 (F29A7.1) mRNA, complete cds. 11/11 None
SNAP00000030197 ENSEMBL cdna:SNAP chromosome:CEL140:II:2758000:2764015:1 10/11 None
GENEFINDER00000030202 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2762417:2763477:1 9/11 None
F29A7.1 ENSEMBL cdna:known chromosome:CEL140:II:2762417:2764015:1 gene:F29A7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2762415-2764014(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F29A7.1
Entrez Gene 173620 Entrez gene
SwissProt O16212 EMBL-EBI
WormBase CE09772 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65271 Hypothetical protein F29A7.1 [Caenorhabditis elegans] ref|NP_494354.1| F29A7.1 [Caenorhabditis elegans] 0.0
blast AAB65272 Hypothetical protein F29A7.2 [Caenorhabditis elegans] ref|NP_494353.2| F29A7.2 [Caenorhabditis elegans] 1.0E-164
blast AAB37932 Hypothetical protein F08D12.8 [Caenorhabditis elegans] ref|NP_494357.1| F08D12.8 [Caenorhabditis elegans] 5.0E-50
blast AAB37932 Hypothetical protein F08D12.8 [Caenorhabditis elegans] ref|NP_494357.1| F08D12.8 [Caenorhabditis elegans] 8.0E-50
blast AAB37932 Hypothetical protein F08D12.8 [Caenorhabditis elegans] ref|NP_494357.1| F08D12.8 [Caenorhabditis elegans] 3.0E-49
blast AAB65272 Hypothetical protein F29A7.2 [Caenorhabditis elegans] ref|NP_494353.2| F29A7.2 [Caenorhabditis elegans] 9.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.9E-8
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.9E-8
Sequence
Target Sequence 
>C. ELEGANS:179910_S_AT
ttcaaatcggcctcgtttgcatctattagtcctggattccagctcactttgaatgatcta
ctcatcataaacagctcgttaccgaaactcatcagctgtcaaatttcttccaaagacttg
aatatttacatcaaacatttgatcaatggatcccatcaaatgctggaaaatattcaatta
atccaaattggcggcacaccttggaacaagaagattgccatgaaggatgttccttttatt
gtgtactcgccgcagtttgaacacgtgattcgaggaggtgattgggaaaatgagaattat
tttctggcgacgcggaacaatggaaaaagccttggtctggtctggacgtttgttgaagaa
agttgtcatattgtaattcttgatattcatggcgccgtgggcctggaaaactgcaaaaaa
gtatgcgaagcgatgaaaagactggcagctgagaaaattgatttttcgtcgtggtcaaac
agtattgtaacaactgcactcggtaatattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAAATCGGCCTCGTTTGCATCTA 334 685 607 Antisense
GCATCTATTAGTCCTGGATTCCAGC 594 309 625 Antisense
GATCTACTCATCATAAACAGCTCGT 509 419 661 Antisense
GTTACCGAAACTCATCAGCTGTCAA 137 447 684 Antisense
CAAATTGGCGGCACACCTTGGAACA 368 191 790 Antisense
ATGTTCCTTTTATTGTGTACTCGCC 248 47 833 Antisense
ACTCGCCGCAGTTTGAACACGTGAT 647 99 851 Antisense
GAATTATTTTCTGGCGACGCGGAAC 511 231 900 Antisense
AAAAGCCTTGGTCTGGTCTGGACGT 85 131 931 Antisense
TTCATGGCGCCGTGGGCCTGGAAAA 435 665 992 Antisense
GTAACAACTGCACTCGGTAATATTC 330 461 1093 Antisense
Sequence Source Affymetrix Proprietary Database