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[179909_at]

Description F36G9.12 /REP_DB=WormBase Gene ID /WP=CE15989 /TR=O45470 /GB=CAB04331.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 48      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 6.1
(-3)
A 		53.4
(-0.9)
P 		143.9
(3)
P 		44.7
(-1.3)
A 		138
B 11.7
(-2.8)
A 		53.6
(-0.4)
A 		114.1
(3)
P 		7.3
(-3)
A 		107
C 2.1
(-3)
A 		61
(-0)
P 		120.6
(3)
P 		29.6
(-1.6)
A 		119
avr 6.6
(-3) 		56
(-0.5) 		126.2
(3) 		27.2
(-2) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 52.2
(3)
A 		4.9
(-2.8)
A 		19.9
(-1)
A 		16.7
(-1.4)
A 		38.9
(1.4)
A 		3.4
(-3)
A 		49
B 6.8
(-1)
A 		2.2
(-3)
A 		2.1
(-3)
A 		5.4
(-1.6)
A 		5.6
(-1.5)
A 		16.3
(3)
A 		14
C 9.7
(-1.1)
A 		26.6
(3)
A 		1.8
(-3)
A 		25.8
(2.8)
A 		5
(-2.2)
A 		18.8
(1.1)
A 		25
avr 22.9
(3) 		11.2
(-1.7) 		7.9
(-3) 		16
(0.2) 		16.5
(0.4) 		12.8
(-1) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 2.2
(-3)
A 		11.6
(-1.4)
P 		37.6
(3)
P 		6.5
(-2.3)
A 		35
B 3.7
(-2.5)
A 		13.2
(-0.2)
A 		26.4
(3)
P 		1.6
(-3)
A 		25
C 0.7
(-3)
A 		17.5
(-0.6)
P 		42
(3)
P 		5
(-2.4)
A 		41
avr 2.2
(-3) 		14.1
(-0.8) 		35.3
(3) 		4.4
(-2.6) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 9.6
(1.8)
A 		1.8
(-2.4)
A 		4.3
(-1.1)
A 		4.2
(-1.1)
A 		11.7
(3)
A 		0.8
(-3)
A 		11
B 2.4
(-1)
A 		0.7
(-2.8)
A 		0.5
(-3)
A 		1.4
(-2)
A 		2.3
(-1.1)
A 		6.1
(3)
A 		6
C 3.6
(-0.6)
A 		8.1
(3)
A 		0.5
(-3)
A 		5.2
(0.7)
A 		1.6
(-2.1)
A 		6.3
(1.6)
A 		8
avr 5.2
(3) 		3.5
(-0) 		1.8
(-3) 		3.6
(0.2) 		5.2
(3) 		4.4
(1.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179909_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14561
Sequence Type Exemplar sequence
Representative Public ID F36G9.12 NCBI
Target Description F36G9.12 /REP_DB=WormBase Gene ID /WP=CE15989 /TR=O45470 /GB=CAB04331.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074606(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074606 NCBI Caenorhabditis elegans F36G9.12 (F36G9.12) mRNA, complete cds. 11/11 None
SNAP00000043428 ENSEMBL cdna:SNAP chromosome:CEL140:V:15982114:15984249:1 10/11 None
F36G9.12 ENSEMBL cdna:known chromosome:CEL140:V:15981308:15984249:1 gene:F36G9.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000043434 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15981307-15984249(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36G9.12
Entrez Gene 185375 Entrez gene
SwissProt O45470 EMBL-EBI
WormBase CE15989 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04331 Hypothetical protein F36G9.12 [Caenorhabditis elegans] ref|NP_507007.1| F36G9.12 [Caenorhabditis elegans] 0.0
blast CAE69641 Hypothetical protein CBG15882 [Caenorhabditis briggsae] 0.0
blast CAB05690 Hypothetical protein C31A11.7 [Caenorhabditis elegans] ref|NP_507120.2| C31A11.7 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 5.2E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507007.1 11 199-221,278-300,315-337,358-377,423-445,450-472,498-517,524-546,573-595,607-626,641-663
F36G9.12 11 199-221,278-300,315-337,358-377,423-445,450-472,498-517,524-546,573-595,607-626,641-663
SNAP00000043428 12 42-64,79-101,114-136,146-168,188-210,256-278,283-305,331-350,357-379,402-424,436-455,470-492
Sequence
Target Sequence 
>C. ELEGANS:179909_AT
ttcactgggcgctagcagttgtcggatggctaattgctttcggaattgctgtggcttgcc
tcttctcaacaaatgattatgataagggagctgtttggaggtttactctatacgactttg
aaaaagcaacctactacaacttttcccgattcttctgggcaatcgctgtttcctgggtca
ttgtggctaaccacatgggatggggagggcccatcaacaattttatgtcgcacccaattt
ggcagccatttggaaaactatcatattgcgcgtacattgtgcattttttcttgatttctt
ggtacacgaacattagcgaagcacccatgcattattattcaacatttcaagtgtggatct
actacgcggttccagtcacaatcatagcctacatttttgcatttttctggagctgccttt
tcgaaatcccaactttaaaattagaaaaaatgctgatagaagctatactcggagcaggac
acactcgagcttcagggaaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCACTGGGCGCTAGCAGTTGTCGG 663 685 1583 Antisense
GTCGGATGGCTAATTGCTTTCGGAA 300 473 1603 Antisense
TTTCGGAATTGCTGTGGCTTGCCTC 521 671 1620 Antisense
GGAGGTTTACTCTATACGACTTTGA 76 497 1679 Antisense
ACTTTTCCCGATTCTTCTGGGCAAT 266 103 1721 Antisense
CTGTTTCCTGGGTCATTGTGGCTAA 454 239 1748 Antisense
TATGTCGCACCCAATTTGGCAGCCA 554 655 1806 Antisense
GAACATTAGCGAAGCACCCATGCAT 683 349 1890 Antisense
AAGTGTGGATCTACTACGCGGTTCC 469 159 1931 Antisense
GGTTCCAGTCACAATCATAGCCTAC 407 507 1950 Antisense
GACACACTCGAGCTTCAGGGAAAGT 87 365 2060 Antisense
Sequence Source Affymetrix Proprietary Database