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[179908_at]

Description C06A8.8 /REP_DB=WormBase Gene ID /WP=CE02459 /TR=Q17691 /GB=AAA81046.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 21      4grp_high_8_8 > 10      6grp_total > 32      4grp_total > 22      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 154.3
(3)
P 		94.1
(-0.7)
A 		56.8
(-3)
A 		132.8
(1.7)
P 		98
B 137.2
(3)
P 		82.3
(-1.8)
P 		68.7
(-3)
M 		128.5
(2.2)
A 		69
C 188.3
(3)
P 		73.8
(-3)
P 		80.3
(-2.7)
P 		184.9
(2.8)
P 		115
avr 159.9
(3) 		83.4
(-2) 		68.6
(-3) 		148.7
(2.3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 258
1 2 3 4 5 6 range
A 228.6
(1.6)
P 		163.8
(0.1)
P 		287.8
(3)
P 		183.6
(0.6)
P 		160.7
(0)
P 		30
(-3)
A 		258
B 234.6
(1.9)
P 		187.1
(0.7)
P 		277.1
(3)
P 		204
(1.1)
P 		158.4
(-0.1)
P 		46.8
(-3)
P 		230
C 186.5
(1.2)
P 		237
(3)
P 		163
(0.4)
P 		227.5
(2.7)
P 		66.3
(-3)
P 		97.9
(-1.9)
P 		171
avr 216.6
(2.2) 		196
(1.5) 		242.6
(3) 		205
(1.8) 		128.5
(-0.7) 		58.2
(-3) 		184
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 56.2
(3)
P 		20.4
(-2.2)
A 		14.8
(-3)
A 		19.4
(-2.3)
P 		41
B 43.7
(3)
P 		20.3
(-2.1)
P 		15.9
(-3)
M 		27.4
(-0.5)
A 		28
C 62.3
(3)
P 		21.2
(-3)
P 		28
(-2)
P 		31.2
(-1.5)
P 		41
avr 54.1
(3) 		20.6
(-2.8) 		19.6
(-3) 		26
(-1.9) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 42.1
(0.8)
P 		58.3
(2.5)
P 		62.7
(3)
P 		46.6
(1.3)
P 		48.5
(1.5)
P 		7.3
(-3)
A 		55
B 81.6
(3)
P 		62.3
(1.2)
P 		67.3
(1.7)
P 		54
(0.4)
P 		64.4
(1.4)
P 		17.4
(-3)
P 		64
C 69.1
(2.6)
P 		72.3
(3)
P 		41.5
(-0.6)
P 		45.7
(-0.1)
P 		21.5
(-3)
P 		32.8
(-1.7)
P 		51
avr 64.3
(3) 		64.3
(3) 		57.2
(2.1) 		48.8
(0.9) 		44.8
(0.4) 		19.2
(-3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179908_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4497
Sequence Type Exemplar sequence
Representative Public ID C06A8.8 NCBI
Target Description C06A8.8 /REP_DB=WormBase Gene ID /WP=CE02459 /TR=Q17691 /GB=AAA81046.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026753(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026753 NCBI Caenorhabditis elegans C06A8.8a (C06A8.8) mRNA, complete cds. 10/11 None
C06A8.8a ENSEMBL cdna:known chromosome:CEL140:II:7765962:7771938:-1 gene:C06A8.8 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026754 1/11 Cross Hyb Matching Probes None
SNAP00000042205 2/11 Cross Hyb Matching Probes None
SNAP00000042206 1/11 Cross Hyb Matching Probes None
GENEFINDER00000042218 4/11 Cross Hyb Matching Probes None
GENEFINDER00000042225 5/11 Cross Hyb Matching Probes None
C06A8.8b.1 1/11 Cross Hyb Matching Probes None
C06A8.8b.2 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
182287 2 1 NM_001026753 179908_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7765958-7771935(-) 100.0 100.0
Public Domain and Genome References
Ensembl C06A8.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN63462 Hypothetical protein C06A8.8a [Caenorhabditis elegans] ref|NP_001021924.1| C06A8.8a [Caenorhabditis elegans] 0.0
blast T15421 hypothetical protein C06A8.8 - Caenorhabditis elegans 1.0E-160
blast CAE67462 Hypothetical protein CBG12963 [Caenorhabditis briggsae] 1.0E-144
Sequence
Target Sequence 
>C. ELEGANS:179908_AT
gtgcacggattctcagattcagacgtcaatcatcatcgtcaagtctccattctttctgtt
attatcagtggagcaggtgaaatactaccatttgacagtcatttgaaggacgaaccaaaa
cagacagagatgagttacatcgaactcgacaagggaattctgctgccgttgaagtcaaaa
ccgaaaatgcgagaaacaaagactattgttggactttacgacacagattcagaagatgag
gagattttattttcaaaagaaatgttgaatagattacgaaaaagggaagccgttatgaaa
aatccacagttgcctacaacatcggcgataactgaaactattgcaattgatacaagttgt
gaaaagtctgctccggtatactttggatctcgtatgtcagagtttaacaacatgctcaga
cttctcgaaagaaaacgagaagaatcaatttgggaggaaaagtacgctcaagcatcagct
attgatgaaagtgtgaaagatctgaaatcacgtgaagcaggactcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCACGGATTCTCAGATTCAGACG 377 481 424 Antisense
GATTCAGACGTCAATCATCATCGTC 372 431 439 Antisense
GTCTCCATTCTTTCTGTTATTATCA 373 471 466 Antisense
AATACTACCATTTGACAGTCATTTG 13 173 504 Antisense
GACAAGGGAATTCTGCTGCCGTTGA 640 363 571 Antisense
TCCACAGTTGCCTACAACATCGGCG 676 587 726 Antisense
GTTGTGAAAAGTCTGCTCCGGTATA 570 433 779 Antisense
GCTCCGGTATACTTTGGATCTCGTA 387 299 793 Antisense
GTTTAACAACATGCTCAGACTTCTC 517 449 825 Antisense
AAGTACGCTCAAGCATCAGCTATTG 124 157 883 Antisense
GAAATCACGTGAAGCAGGACTCAGA 211 363 927 Antisense
Sequence Source Affymetrix Proprietary Database