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[179906_at]

Description Y51H4A.2 /REP_DB=WormBase Gene ID /WP=CE25364 /TR=Q9U265 /GB=CAB63380.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 60.1
(-3)
A 		67.6
(-2.4)
A 		87.4
(-0.6)
A 		129.8
(3)
A 		70
B 53
(-3)
A 		108.2
(3)
M 		93.7
(1.4)
A 		55.5
(-2.7)
A 		55
C 115.3
(3)
P 		85.9
(-0.1)
A 		57.7
(-3)
A 		107.3
(2.2)
A 		58
avr 76.1
(-3) 		87.2
(0.1) 		79.6
(-2) 		97.5
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 21.6
(-3)
A 		55.9
(0.5)
A 		48.5
(-0.2)
A 		79.6
(3)
M 		75.9
(2.6)
A 		64.5
(1.4)
A 		58
B 41.2
(-3)
A 		61
(-1.4)
A 		116.4
(3)
A 		52.6
(-2.1)
A 		49.4
(-2.3)
A 		47.7
(-2.5)
A 		75
C 74.3
(3)
P 		61.9
(1)
A 		37.7
(-2.8)
A 		69.5
(2.2)
A 		36.5
(-3)
A 		54
(-0.2)
P 		38
avr 45.7
(-3) 		59.6
(0.8) 		67.5
(3) 		67.2
(2.9) 		53.9
(-0.7) 		55.4
(-0.3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 21.9
(2.3)
A 		14.7
(-3)
A 		22.9
(3)
A 		19
(0.1)
A 		8
B 16.9
(-0.9)
A 		26.7
(3)
M 		21.7
(1)
A 		11.8
(-3)
A 		15
C 38.2
(3)
P 		24.7
(-1)
A 		20.1
(-2.4)
A 		18.1
(-3)
A 		20
avr 25.7
(3) 		22
(0.6) 		21.6
(0.4) 		16.3
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 4
(-3)
A 		19.9
(2)
A 		10.6
(-0.9)
A 		20.2
(2.1)
M 		22.9
(3)
A 		15.7
(0.7)
A 		19
B 14.3
(-2.8)
A 		20.3
(-0.3)
A 		28.3
(3)
A 		13.9
(-3)
A 		20.1
(-0.4)
A 		17.8
(-1.4)
A 		14
C 27.5
(3)
P 		18.9
(0.1)
A 		9.6
(-3)
A 		14
(-1.5)
A 		11.8
(-2.3)
A 		18.1
(-0.2)
P 		18
avr 15.3
(-3) 		19.7
(3) 		16.2
(-1.8) 		16
(-2) 		18.3
(1.1) 		17.2
(-0.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179906_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9562
Sequence Type Exemplar sequence
Representative Public ID Y51H4A.2 NCBI
Target Description Y51H4A.2 /REP_DB=WormBase Gene ID /WP=CE25364 /TR=Q9U265 /GB=CAB63380.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070559(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070559 NCBI Caenorhabditis elegans Y51H4A.2 (Y51H4A.2) mRNA, complete cds. 11/11 None
GENEFINDER00000000208 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16483952:16494470:-1 11/11 None
Y51H4A.2 ENSEMBL cdna:known chromosome:CEL140:IV:16493388:16494470:-1 gene:Y51H4A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16493393-16494476(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H4A.2
Entrez Gene 190145 Entrez gene
SwissProt Q9U265 EMBL-EBI
WormBase CE25364 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63379 Hypothetical protein Y51H4A.3 [Caenorhabditis elegans] ref|NP_502959.1| RHO (small G protein) family member (rho-1) [Caenorhabditis elegans] sp|Q22038|RHOA_CAEEL RAS-like GTP-binding protein RhoA gb|AAC37216.1| guanine nucleotide regulatory protein emb|CAE68045.1| Hypothetical protein CBG13664 [Caenorhabditis briggsae] 6.0E-90
blast AAY56741 guanine nucleotide regulatory protein [Caenorhabditis remanei] 1.0E-89
blast CAB63380 Hypothetical protein Y51H4A.2 [Caenorhabditis elegans] ref|NP_502960.1| Y51H4A.2 [Caenorhabditis elegans] 1.0E-84
blast XP_623225 PREDICTED: similar to ENSANGP00000015684 [Apis mellifera] 7.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 2.1E-84
Sequence
Target Sequence 
>C. ELEGANS:179906_AT
ttgttctcgcatttcgatccacatatacactatatacactgtggacttgctgctccgcga
gagccccaacgccaaaagggcgctctcgatttcaaatttcaagagcactcaaccgcgacc
gctcttctgtgtggtggaagagtcccccttctctatgcccggaaattgagttttccacac
ccgtggcacggcgcacacagaagcagtgtagataatggaaaaaagatgagacgaagagga
aaggcgaagcctattctcactcaatttatctccaagtcattttttttatttgacaaaatg
tacaaaaatgaagtggaattatcatatttcaagtcgtccattttttgtacgttttttcca
aaaaaaatcacgccatttcgtttattaggcgatatcccggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTTCTCGCATTTCGATCCACATA 47 707 112 Antisense
ATATACACTGTGGACTTGCTGCTCC 512 19 143 Antisense
GAGCCCCAACGCCAAAAGGGCGCTC 627 385 172 Antisense
AAGGGCGCTCTCGATTTCAAATTTC 599 159 187 Antisense
ATTTCAAGAGCACTCAACCGCGACC 706 15 207 Antisense
TCTGTGTGGTGGAAGAGTCCCCCTT 152 607 237 Antisense
CCCTTCTCTATGCCCGGAAATTGAG 616 259 257 Antisense
GGAAATTGAGTTTTCCACACCCGTG 345 433 272 Antisense
GAAGCCTATTCTCACTCAATTTATC 444 345 357 Antisense
ATCATATTTCAAGTCGTCCATTTTT 436 29 432 Antisense
TCGTTTATTAGGCGATATCCCGGCT 245 601 489 Antisense
Sequence Source Affymetrix Proprietary Database