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[179905_at]

Description K10D2.3 /REP_DB=WormBase Gene ID /WP=CE02015 /TR=Q09409 /GB=AAA62541.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 75      4grp_high_8_8 > 58      6grp_total > 75      4grp_total > 62      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 122.5
(3)
P 		115.4
(2.2)
P 		122.2
(3)
P 		68.8
(-3)
A 		54
B 120.8
(3)
P 		68
(-3)
A 		99.4
(0.6)
P 		70
(-2.8)
P 		53
C 142.7
(1.7)
P 		121.1
(-1.2)
M 		152.4
(3)
P 		107.3
(-3)
M 		45
avr 128.7
(3) 		101.5
(-0.5) 		124.7
(2.5) 		82
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 88.3
(-3)
M 		126.6
(-1.4)
P 		104
(-2.4)
P 		137.1
(-1)
P 		161
(-0)
P 		236
(3)
P 		148
B 88.8
(-3)
P 		145.8
(0.5)
P 		150.9
(0.8)
P 		177.7
(2.4)
P 		131.6
(-0.4)
P 		187.5
(3)
P 		99
C 124.8
(-3)
P 		152.1
(-1.1)
P 		185.3
(1.3)
P 		209.5
(3)
P 		135.7
(-2.2)
P 		173.6
(0.5)
P 		85
avr 100.6
(-3) 		141.5
(-0.5) 		146.7
(-0.2) 		174.8
(1.5) 		142.8
(-0.4) 		199
(3) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 44.6
(3)
P 		25
(-0.4)
P 		32
(0.8)
P 		10.1
(-3)
A 		35
B 38.5
(3)
P 		16.8
(-2.5)
A 		23
(-0.9)
P 		14.9
(-3)
P 		24
C 47.2
(2)
P 		34.8
(-0.1)
M 		53.1
(3)
P 		18.1
(-3)
M 		35
avr 43.4
(3) 		25.5
(-0.7) 		36
(1.5) 		14.4
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 16.3
(-3)
M 		45
(1.2)
P 		22.7
(-2.1)
P 		34.8
(-0.3)
P 		48.6
(1.7)
P 		57.5
(3)
P 		41
B 30.9
(-3)
P 		48.5
(-0.3)
P 		36.6
(-2.1)
P 		47.1
(-0.5)
P 		53.5
(0.5)
P 		69.9
(3)
P 		39
C 46.3
(-1.4)
P 		46.4
(-1.4)
P 		47.2
(-1.1)
P 		42.1
(-3)
P 		43.9
(-2.3)
P 		58.1
(3)
P 		16
avr 31.2
(-3) 		46.6
(0) 		35.5
(-2.2) 		41.3
(-1) 		48.7
(0.4) 		61.8
(3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179905_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6363
Sequence Type Exemplar sequence
Representative Public ID K10D2.3 NCBI
Target Description K10D2.3 /REP_DB=WormBase Gene ID /WP=CE02015 /TR=Q09409 /GB=AAA62541.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065698(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065698 NCBI Caenorhabditis elegans K10D2.3 (K10D2.3) mRNA, complete cds. 11/11 None
SNAP00000029357 ENSEMBL cdna:SNAP chromosome:CEL140:III:5173949:5180010:1 11/11 None
GENEFINDER00000029366 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5173949:5180074:1 11/11 None
K10D2.3 ENSEMBL cdna:known chromosome:CEL140:III:5173902:5180462:1 gene:K10D2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5173947-5180009(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K10D2.3
Entrez Gene 175707 Entrez gene
SwissProt Q09409 EMBL-EBI
WormBase CE02015 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1602503_S_AT similar to zinc finger, CCHC domain containing 11 isoform b cfa
CANINE:1597451_AT similar to zinc finger, CCHC domain containing 11 isoform b cfa
CANINE_2:CFA.2227.1.A1_S_AT similar to zinc finger, CCHC domain containing 11 isoform b cfa
CANINE_2:CFA.6673.1.A1_AT similar to zinc finger, CCHC domain containing 11 isoform b cfa
CANINE_2:CFA.6673.1.A1_S_AT similar to zinc finger, CCHC domain containing 11 isoform b cfa
CHICKEN:GGA.17600.1.S1_S_AT zinc finger, CCHC domain containing 11 gga
HG-U133_PLUS_2:217594_AT zinc finger, CCHC domain containing 11 hs
HG-U133A_2:217594_AT zinc finger, CCHC domain containing 11 hs
HG-U133A:217594_AT zinc finger, CCHC domain containing 11 hs
HU35KSUBA:HUM_ALU_AT zinc finger, CCHC domain containing 11 hs
HU35KSUBB:HUM_ALU_AT zinc finger, CCHC domain containing 11 hs
HU35KSUBC:HUM_ALU_AT zinc finger, CCHC domain containing 11 hs
HU35KSUBD:HUM_ALU_AT zinc finger, CCHC domain containing 11 hs
HUGENEFL:HUM_ALU_AT zinc finger, CCHC domain containing 11 hs
HC-G110:HUM_ALU_AT zinc finger, CCHC domain containing 11 hs
HU35KSUBC:RC_R60512_S_AT zinc finger, CCHC domain containing 11 hs
HUGENEFL:D83776_AT zinc finger, CCHC domain containing 11 hs
U133_X3P:HS.217305.0.A1_3P_AT zinc finger, CCHC domain containing 11 hs
U133_X3P:HS.12413.0.S1_3P_AT zinc finger, CCHC domain containing 11 hs
HG-U133A_2:212704_AT zinc finger, CCHC domain containing 11 hs
HG-U133_PLUS_2:212704_AT zinc finger, CCHC domain containing 11 hs
HG-U133A:212704_AT zinc finger, CCHC domain containing 11 hs
HG-U95AV2:41669_AT zinc finger, CCHC domain containing 11 hs
HG-U133_PLUS_2:230713_AT Zinc finger, CCHC domain containing 11 hs
HG-U133B:230713_AT Zinc finger, CCHC domain containing 11 hs
HG-U95B:59814_AT Zinc finger, CCHC domain containing 11 hs
HU35KSUBC:RC_N67572_AT Zinc finger, CCHC domain containing 11 hs
U133_X3P:HS.182185.0.A1_3P_AT Zinc finger, CCHC domain containing 11 hs
MOUSE430_2:1439631_AT zinc finger, CCHC domain containing 11 mm
MOE430B:1439631_AT zinc finger, CCHC domain containing 11 mm
MG-U74BV2:110017_AT zinc finger, CCHC domain containing 11 mm
MOE430B:1437395_AT zinc finger, CCHC domain containing 11 mm
MOUSE430_2:1437395_AT zinc finger, CCHC domain containing 11 mm
MOE430B:1456553_AT PREDICTED: Mus musculus zinc finger, CCHC domain containing 11 (Zcchc11), mRNA mm
MOUSE430_2:1456553_AT PREDICTED: Mus musculus zinc finger, CCHC domain containing 11 (Zcchc11), mRNA mm
MOE430B:1456668_AT PREDICTED: Mus musculus zinc finger, CCHC domain containing 11 (Zcchc11), mRNA mm
MOUSE430_2:1456668_AT PREDICTED: Mus musculus zinc finger, CCHC domain containing 11 (Zcchc11), mRNA mm
MU19KSUBA:TC25178_AT PREDICTED: Mus musculus zinc finger, CCHC domain containing 11 (Zcchc11), mRNA mm
MU19KSUBA:TC25178_G_AT PREDICTED: Mus musculus zinc finger, CCHC domain containing 11 (Zcchc11), mRNA mm
MU19KSUBB:TC31240_AT PREDICTED: Mus musculus zinc finger, CCHC domain containing 11 (Zcchc11), mRNA mm
MU19KSUBC:TC41062_AT PREDICTED: Mus musculus zinc finger, CCHC domain containing 11 (Zcchc11), mRNA mm
RG-U34C:RC_AI228818_AT zinc finger, CCHC domain containing 11 (predicted) rn
RAE230B:1390820_AT zinc finger, CCHC domain containing 11 (predicted) rn
RAT230_2:1390820_AT zinc finger, CCHC domain containing 11 (predicted) rn
RAE230B:1397858_AT Zinc finger, CCHC domain containing 11 (predicted) rn
RAT230_2:1397858_AT Zinc finger, CCHC domain containing 11 (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA62541 Hypothetical protein K10D2.3 [Caenorhabditis elegans] ref|NP_498099.1| K10D2.3 [Caenorhabditis elegans] 0.0
blast CAE73782 Hypothetical protein CBG21327 [Caenorhabditis briggsae] 0.0
blast CAE57164 Hypothetical protein CBG25098 [Caenorhabditis briggsae] 5.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR002058 EMBL-EBI PAP/25A-associated domain 5.7E-17
Pfam IPR002058 EMBL-EBI PAP/25A-associated domain 3.2E-24
Sequence
Target Sequence 
>C. ELEGANS:179905_AT
gacaactgggatacgtcatttgctcaagttgagaccagtttgctacaacgttggcctaaa
aacaaagaatcgtgtgctcagctgctcattggatactttgactattattcgcgttttgat
ttccggaattttgttgttcaatgtcgacgggaaatgatattgtcgaaaatggaaaaagag
tggccgagacctctttgtgtagaggatccattcgatttgagccataatctgagcagcggt
gttaacaagaaaatgttcgtattcattatgaaagtgttcatcaactcacgagcagtcttc
atgtctgagaaaccaccgatgaatcgagatcacactttcctatcatcatatcaacaccag
ttacttcgaaaatgcaatcaaggatccgctccaactgatcgtcaatgtcatcaatgtcat
aggataggacattttgtagaatcgtgtccgcaaagagccctggcaaaagaagcccggaag
cgatttggatcaaactcgacaaactcatcataccgatcaaatgatagtggaagaggattc
aaaaatggagaggaaggtggcgatcgtctgacttatcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAACTGGGATACGTCATTTGCTC 639 365 3676 Antisense
GACCAGTTTGCTACAACGTTGGCCT 22 385 3708 Antisense
GACTATTATTCGCGTTTTGATTTCC 586 371 3775 Antisense
AAGAGTGGCCGAGACCTCTTTGTGT 131 155 3851 Antisense
GAGGATCCATTCGATTTGAGCCATA 473 403 3877 Antisense
CAACTCACGAGCAGTCTTCATGTCT 50 189 3957 Antisense
GAGATCACACTTTCCTATCATCATA 323 397 4001 Antisense
GCTCCAACTGATCGTCAATGTCATC 587 297 4063 Antisense
TAGAATCGTGTCCGCAAAGAGCCCT 119 651 4112 Antisense
GAAGCCCGGAAGCGATTTGGATCAA 66 345 4144 Antisense
GGTGGCGATCGTCTGACTTATCACA 135 499 4231 Antisense
Sequence Source Affymetrix Proprietary Database