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[179904_at]

Description F35A5.5 /REP_DB=WormBase Gene ID /WP=CE04489 /TR=Q20001 /GB=AAB52644.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 41      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 4.6
(-3)
A 		8.5
(-2.5)
A 		50.4
(3)
A 		37.7
(1.3)
A 		46
B 4.2
(-3)
A 		85.3
(3)
M 		70.2
(1.9)
P 		4.8
(-3)
A 		81
C 11.9
(-3)
A 		47.1
(1.8)
A 		55.6
(3)
A 		43.1
(1.3)
A 		44
avr 6.9
(-3) 		47
(1.6) 		58.7
(3) 		28.5
(-0.5) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 22.9
(0.4)
A 		23.2
(0.4)
A 		36.3
(3)
P 		23.6
(0.5)
A 		5.8
(-3)
A 		8.1
(-2.5)
A 		31
B 7
(-2.2)
A 		35.1
(3)
P 		23.3
(0.8)
A 		17.8
(-0.2)
A 		17.5
(-0.2)
A 		2.6
(-3)
A 		33
C 20.2
(-1.2)
A 		59.7
(3)
P 		10.7
(-2.2)
A 		3.3
(-3)
A 		18.4
(-1.4)
A 		4
(-2.9)
A 		56
avr 16.7
(-0.9) 		39.3
(3) 		23.4
(0.2) 		14.9
(-1.3) 		13.9
(-1.4) 		4.9
(-3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 1.7
(-3)
A 		1.8
(-2.9)
A 		13.2
(3)
A 		5.5
(-1)
A 		12
B 1.3
(-2.9)
A 		21.1
(3)
M 		16.3
(1.6)
P 		1
(-3)
A 		20
C 3.9
(-3)
A 		13.5
(0.7)
A 		19.4
(3)
A 		7.3
(-1.7)
A 		16
avr 2.3
(-3) 		12.1
(1.2) 		16.3
(3) 		4.6
(-2) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 4.2
(-0.8)
A 		8.3
(3)
A 		7.9
(2.6)
P 		6
(0.9)
A 		1.8
(-3)
A 		2
(-2.8)
A 		7
B 2.4
(-2.2)
A 		11.7
(3)
P 		5.7
(-0.4)
A 		4.7
(-0.9)
A 		7.1
(0.4)
A 		1
(-3)
A 		11
C 7.5
(-0.7)
A 		18.2
(3)
P 		2.7
(-2.3)
A 		0.7
(-3)
A 		5.9
(-1.2)
A 		1.3
(-2.8)
A 		18
avr 4.7
(-1.2) 		12.7
(3) 		5.4
(-0.9) 		3.8
(-1.7) 		4.9
(-1.1) 		1.4
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179904_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18335
Sequence Type Exemplar sequence
Representative Public ID F35A5.5 NCBI
Target Description F35A5.5 /REP_DB=WormBase Gene ID /WP=CE04489 /TR=Q20001 /GB=AAB52644.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076257(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076257 NCBI Caenorhabditis elegans F35A5.5 (F35A5.5) mRNA, complete cds. 11/11 None
GENEFINDER00000032209 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3789869:3795353:-1 11/11 None
SNAP00000032202 ENSEMBL cdna:SNAP chromosome:CEL140:X:3793896:3794796:-1 11/11 None
F35A5.5 ENSEMBL cdna:known chromosome:CEL140:X:3793896:3794378:-1 gene:F35A5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3793896-3794379(-) 89.95 100.0
Public Domain and Genome References
Gene Title
Ensembl F35A5.5
Entrez Gene 185250 Entrez gene
SwissProt Q20001 EMBL-EBI
WormBase CE04489 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52645 Hypothetical protein F35A5.4 [Caenorhabditis elegans] ref|NP_508657.2| F35A5.4 [Caenorhabditis elegans] 0.0
blast CAE68483 Hypothetical protein CBG14285 [Caenorhabditis briggsae] 0.0
blast CAE64591 Hypothetical protein CBG09346 [Caenorhabditis briggsae] 2.0E-55
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000032209 1 47-69
SNAP00000032202 1 32-54
Sequence
Target Sequence 
>C. ELEGANS:179904_AT
taccagttcccgtgcagagcaattgctgtagttgctgcatgccggtttgtatgtcggttt
gtatgagaggaggttgtggatacggaggcggtggttacagttctggttattcatccggag
gatgctatggaggaggaggaggatcatcttgtggttgtaatagttttggttatggacgga
gaaagagagctacacttgtgaagaataatgccgtggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCAGTTCCCGTGCAGAGCAATTG 45 651 134 Antisense
GTTCCCGTGCAGAGCAATTGCTGTA 86 441 139 Antisense
ATTGCTGTAGTTGCTGCATGCCGGT 331 7 155 Antisense
GCTGCATGCCGGTTTGTATGTCGGT 294 297 167 Antisense
CGGTTTGTATGTCGGTTTGTATGAG 87 245 176 Antisense
GGTTTGTATGAGAGGAGGTTGTGGA 648 501 189 Antisense
TACGGAGGCGGTGGTTACAGTTCTG 410 647 214 Antisense
ACAGTTCTGGTTATTCATCCGGAGG 379 75 230 Antisense
GGATCATCTTGTGGTTGTAATAGTT 701 509 274 Antisense
GACGGAGAAAGAGAGCTACACTTGT 689 375 308 Antisense
ACTTGTGAAGAATAATGCCGTGGCA 482 103 327 Antisense
Sequence Source Affymetrix Proprietary Database