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[179903_at]

Description ZK354.7 /REP_DB=WormBase Gene ID /WP=CE15322 /TR=P91567 /GB=AAB42259.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 1.3
(-3)
A 		12.9
(2.8)
A 		2.6
(-2.3)
A 		13.2
(3)
A 		12
B 2.9
(-3)
A 		9.1
(3)
A 		4.9
(-1.1)
A 		6.5
(0.5)
A 		6
C 4.6
(-2.8)
A 		4.6
(-2.8)
A 		3.2
(-3)
A 		47
(3)
A 		44
avr 2.9
(-3) 		8.9
(-1.1) 		3.6
(-2.8) 		22.2
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 3
(-3)
A 		2.9
(-3)
A 		6.7
(-2.8)
A 		2.3
(-3)
A 		57.8
(-0.2)
A 		121.4
(3)
M 		119
B 3.5
(-3)
A 		3.4
(-3)
A 		7.2
(-2.9)
A 		16.6
(-2.5)
A 		38.1
(-1.8)
A 		173.1
(3)
P 		170
C 1
(-3)
A 		4.9
(-2.8)
A 		2.6
(-2.9)
A 		1.8
(-3)
A 		32.4
(-1.7)
A 		147.3
(3)
P 		146
avr 2.5
(-3) 		3.7
(-3) 		5.5
(-2.9) 		6.9
(-2.8) 		42.8
(-1.3) 		147.3
(3) 		145
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.5
(-3)
A 		2.8
(3)
A 		0.7
(-2.5)
A 		1.9
(0.7)
A 		2
B 0.9
(-3)
A 		2.2
(3)
A 		1.1
(-2.1)
A 		1.4
(-0.7)
A 		1
C 1.5
(-2.6)
A 		1.3
(-2.8)
A 		1.1
(-3)
A 		7.9
(3)
A 		7
avr 1
(-3) 		2.1
(-0.6) 		1
(-3) 		3.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1
(-2.9)
A 		1.5
(-2.8)
A 		0.6
(-3)
A 		17.4
(0.5)
A 		29.6
(3)
M 		29
B 1.2
(-3)
A 		1.1
(-3)
A 		1.7
(-2.9)
A 		4.4
(-2.7)
A 		15.5
(-1.6)
A 		64.6
(3)
P 		64
C 0.4
(-3)
A 		1.5
(-2.9)
A 		0.7
(-3)
A 		0.4
(-3)
A 		10.5
(-1.8)
A 		49.3
(3)
P 		49
avr 0.7
(-3) 		1.2
(-2.9) 		1.3
(-2.9) 		1.8
(-2.9) 		14.5
(-1.2) 		47.8
(3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179903_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10659
Sequence Type Exemplar sequence
Representative Public ID ZK354.7 NCBI
Target Description ZK354.7 /REP_DB=WormBase Gene ID /WP=CE15322 /TR=P91567 /GB=AAB42259.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068373(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068373 NCBI Caenorhabditis elegans ZK354.7 (ZK354.7) mRNA, complete cds. 11/11 None
SNAP00000006007 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5302130:5303067:-1 11/11 None
GENEFINDER00000006025 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5302115:5303067:-1 11/11 None
ZK354.7 ENSEMBL cdna:known chromosome:CEL140:IV:5302130:5303067:-1 gene:ZK354.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5302135-5303073(-) 61.78 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK354.7
Entrez Gene 191294 Entrez gene
SwissProt P91567 EMBL-EBI
WormBase CE15322 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB42259 Hypothetical protein ZK354.7 [Caenorhabditis elegans] ref|NP_500774.1| ZK354.7 [Caenorhabditis elegans] 7.0E-64
blast CAE63940 Hypothetical protein CBG08519 [Caenorhabditis briggsae] 2.0E-35
blast AAA68716 Hypothetical protein K05F1.9 [Caenorhabditis elegans] ref|NP_495146.1| K05F1.9 [Caenorhabditis elegans] 1.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 2.8E-30
Sequence
Target Sequence 
>C. ELEGANS:179903_AT
ttctcaagctgagcgctgaaacagtgttattttcaaatgcaaaacttggtgatgaggtca
caacaacggtgttgaaaatgacaaatcctacgacggacaagtgtgcttttaaagtcaaat
gcacttcgaatgatttgttcaaaatcaaaacaccagtcggctatatcaaaccagatgaaa
ccattgatataccgttgtgccacaatccaggaaaagcgattccagaaaacaataagcagt
actttgcattctactacattaaaacaaaggaagacggacctgctcgtgacgcatggaaga
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCAAGCTGAGCGCTGAAACAGT 368 681 65 Antisense
GTGATGAGGTCACAACAACGGTGTT 476 483 113 Antisense
TGAAAATGACAAATCCTACGACGGA 501 571 137 Antisense
CCTACGACGGACAAGTGTGCTTTTA 208 265 151 Antisense
AATGCACTTCGAATGATTTGTTCAA 458 165 182 Antisense
ACACCAGTCGGCTATATCAAACCAG 258 109 214 Antisense
ACCATTGATATACCGTTGTGCCACA 621 85 244 Antisense
CGTTGTGCCACAATCCAGGAAAAGC 359 247 257 Antisense
AGCAGTACTTTGCATTCTACTACAT 465 77 299 Antisense
AAAGGAAGACGGACCTGCTCGTGAC 280 117 330 Antisense
GACCTGCTCGTGACGCATGGAAGAA 450 383 341 Antisense
Sequence Source Affymetrix Proprietary Database