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[179902_s_at]

Description R11E3.8 /REP_DB=WormBase Gene ID /WP=CE19550 /TR=Q9TYX1 /GB=AAK39270.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 68      6grp_total > 97      4grp_total > 60      6grp_highest_sub > In      6grp_cgc > 58      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 936
1 2 3 4 range
A 2217.3
(3)
P 		1765
(0.1)
P 		1867.5
(0.7)
P 		1287.7
(-3)
P 		930
B 1814.8
(-1.1)
P 		2223.2
(3)
P 		2058.3
(1.3)
P 		1624.9
(-3)
P 		598
C 1862.7
(0.7)
P 		1551.1
(-1.8)
P 		2148.3
(3)
P 		1405
(-3)
P 		743
avr 1964.9
(2.4) 		1846.4
(1.2) 		2024.7
(3) 		1439.2
(-3) 		586

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 755
1 2 3 4 5 6 range
A 1881.8
(-3)
P 		2019.3
(-1.2)
P 		2145.8
(0.5)
P 		2092.5
(-0.2)
P 		2115.6
(0.1)
P 		2337.6
(3)
P 		456
B 2036.6
(-0.8)
P 		2125.2
(-0.1)
P 		1758.3
(-3)
P 		2194.9
(0.5)
P 		2276.6
(1.1)
P 		2513.1
(3)
P 		755
C 1843.6
(-3)
P 		1867.6
(-2.8)
P 		2312.2
(1.3)
P 		1845.2
(-3)
P 		2411.1
(2.2)
P 		2504.5
(3)
P 		661
avr 1920.7
(-3) 		2004
(-2.1) 		2072.1
(-1.3) 		2044.2
(-1.6) 		2267.8
(0.9) 		2451.7
(3) 		531
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 619
1 2 3 4 range
A 807.3
(3)
P 		383.1
(-1.1)
P 		488.2
(-0.1)
P 		188.5
(-3)
P 		619
B 578.7
(3)
P 		549.1
(2.2)
P 		477
(0.4)
P 		346.3
(-3)
P 		232
C 616.6
(1.5)
P 		445.9
(-0.6)
P 		748.8
(3)
P 		236.9
(-3)
P 		512
avr 667.5
(3) 		459.4
(-0) 		571.3
(1.6) 		257.2
(-3) 		410

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 590
1 2 3 4 5 6 range
A 346.9
(-3)
P 		718.1
(3)
P 		467.3
(-1.1)
P 		530.7
(-0)
P 		638.4
(1.7)
P 		569.1
(0.6)
P 		371
B 708.6
(0.3)
P 		707.4
(0.3)
P 		427
(-3)
P 		581.4
(-1.2)
P 		924.9
(2.9)
P 		937.1
(3)
P 		510
C 683.3
(1)
P 		569.9
(-0.4)
P 		588.5
(-0.2)
P 		371.1
(-3)
P 		780.2
(2.3)
P 		838.4
(3)
P 		467
avr 579.6
(-1.2) 		665.1
(0.6) 		494.3
(-3) 		494.4
(-3) 		781.2
(3) 		781.5
(3) 		287
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179902_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10787
Sequence Type Exemplar sequence
Representative Public ID R11E3.8 NCBI
Target Description R11E3.8 /REP_DB=WormBase Gene ID /WP=CE19550 /TR=Q9TYX1 /GB=AAK39270.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068246(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068246 NCBI Caenorhabditis elegans Dipeptidyl Peptidase Four (IV) family member (dpf-5) (dpf-5) mRNA, complete cds. 11/11 None
SNAP00000009830 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4799590:4806582:-1 11/11 None
GENEFINDER00000009844 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4802821:4806582:-1 11/11 None
R11E3.8.2 ENSEMBL cdna:known chromosome:CEL140:IV:4802700:4806578:-1 gene:R11E3.8 11/11 None
R11E3.8.1 ENSEMBL cdna:known chromosome:CEL140:IV:4802700:4806576:-1 gene:R11E3.8 11/11 None
R11E3.8.3 ENSEMBL cdna:known chromosome:CEL140:IV:4802760:4806576:-1 gene:R11E3.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4802826-4806588(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dpf-5
Ensembl R11E3.8
Entrez Gene 177251 Entrez gene
SwissProt Q9TYX1 EMBL-EBI
WormBase CE29985 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:20663_AT acylaminoacyl-peptidase-related at
ATH1-121501:245594_AT acylaminoacyl-peptidase-related at
CANINE:1583705_AT similar to N-acylaminoacyl-peptide hydrolase cfa
CANINE_2:CFA.5494.1.A1_AT similar to N-acylaminoacyl-peptide hydrolase cfa
CANINE_2:CFAAFFX.17817.1.S1_S_AT similar to N-acylaminoacyl-peptide hydrolase cfa
HG-U133_PLUS_2:201284_S_AT N-acylaminoacyl-peptide hydrolase hs
HG-U133A:201284_S_AT N-acylaminoacyl-peptide hydrolase hs
HG-FOCUS:201284_S_AT N-acylaminoacyl-peptide hydrolase hs
HG-U133A_2:201284_S_AT N-acylaminoacyl-peptide hydrolase hs
U133_X3P:G9951916_3P_X_AT N-acylaminoacyl-peptide hydrolase hs
U133_X3P:G9951916_3P_A_AT N-acylaminoacyl-peptide hydrolase hs
MOUSE430A_2:1426030_A_AT acylpeptide hydrolase mm
MOUSE430_2:1426030_A_AT acylpeptide hydrolase mm
MOE430A:1426030_A_AT acylpeptide hydrolase mm
MG-U74BV2:106053_S_AT acylpeptide hydrolase mm
MG-U74BV2:106054_AT acylpeptide hydrolase mm
RG-U34A:J04733_AT N-acylaminoacyl-peptide hydrolase rn
RAE230A:1398815_AT N-acylaminoacyl-peptide hydrolase rn
RAT230_2:1398815_AT N-acylaminoacyl-peptide hydrolase rn
Protein Similarities
Method ID Description E-Value
blast AAK39270 Dipeptidyl peptidase four (iv) family protein 5 [Caenorhabditis elegans] ref|NP_500647.2| Dipeptidyl Peptidase Four (IV) family member (dpf-5) [Caenorhabditis elegans] 0.0
blast T33751 hypothetical protein R11E3.8 - Caenorhabditis elegans 0.0
blast CAE66387 Hypothetical protein CBG11649 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:179902_S_AT
actctggatatgccgtccttcaagtcaatttccgtggatcactcggatttggtgacgatt
ttattcgtgctctgcctggaaactgcggagatatggatgttaaggatgttcataacgcag
ttctcaccgtcttggataagaatccacgtatttctcgagacaaggttgtactcttcggag
gatctcatggagggttcctggtgtctcatttaattggacaatatccaggattctacaaaa
gttgtgttgccttgaatccagtcgtcaacattgccacaatgcatgatatcactgatattc
ctgaatggtgctatttcgagggaaccggagaatatccagactggacaaagatcacgacca
ccgaacaacgggagaaaatgttcaactcttcgccaattgctcatgtggagaacgcaacta
ctccgtatctcttgctcattggtgaaaaggatcttcgtgtcgttcctcactacagagcat
tta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCTGGATATGCCGTCCTTCAAGT 78 101 1628 Antisense
GTGACGATTTTATTCGTGCTCTGCC 482 483 1679 Antisense
GAATCCACGTATTTCTCGAGACAAG 179 329 1767 Antisense
GGTTGTACTCTTCGGAGGATCTCAT 499 507 1791 Antisense
TCATGGAGGGTTCCTGGTGTCTCAT 33 615 1812 Antisense
GTTGCCTTGAATCCAGTCGTCAACA 651 439 1873 Antisense
AACTCTTCGCCAATTGCTCATGTGG 642 139 2011 Antisense
GGAGAACGCAACTACTCCGTATCTC 656 517 2034 Antisense
TCCGTATCTCTTGCTCATTGGTGAA 327 595 2049 Antisense
GAAAAGGATCTTCGTGTCGTTCCTC 698 353 2071 Antisense
GTCGTTCCTCACTACAGAGCATTTA 469 473 2086 Antisense
Sequence Source Affymetrix Proprietary Database