[Home] | [Total List]

[179901_at]

Description Y51H4A.1 /REP_DB=WormBase Gene ID /WP=CE22328 /TR=Q9NAE5 /GB=CAB61134.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 03      4grp_high_8_8 > 17      6grp_total > 25      4grp_total > 38      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 108.5
(3)
P 		85.9
(0.5)
P 		54.4
(-3)
P 		63.3
(-2)
P 		54
B 124
(3)
P 		45.3
(-2.2)
P 		55.6
(-1.6)
P 		34
(-3)
M 		90
C 93.1
(1.3)
P 		93.8
(1.3)
A 		43
(-3)
P 		113.5
(3)
P 		71
avr 108.5
(3) 		75
(-0.5) 		51
(-3) 		70.3
(-1) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 101.1
(3)
P 		85
(1.6)
P 		74.9
(0.7)
P 		54
(-1.2)
P 		41.8
(-2.3)
M 		34.1
(-3)
P 		67
B 80.7
(2.9)
P 		81.6
(3)
P 		78.9
(2.6)
P 		38.7
(-3)
P 		69
(1.2)
M 		65.1
(0.7)
P 		43
C 85.3
(2)
P 		94
(3)
P 		67.3
(-0.1)
P 		90.9
(2.6)
P 		43.1
(-3)
P 		70.4
(0.2)
P 		51
avr 89
(3) 		86.9
(2.7) 		73.7
(0.6) 		61.2
(-1.4) 		51.3
(-3) 		56.5
(-2.2) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 39.5
(3)
P 		18.7
(-1.1)
P 		14.2
(-2)
P 		9.3
(-3)
P 		30
B 39.5
(3)
P 		11.2
(-2.3)
P 		12.9
(-1.9)
P 		7.2
(-3)
M 		32
C 30.8
(3)
P 		27
(1.6)
A 		15
(-3)
P 		19.1
(-1.4)
P 		16
avr 36.6
(3) 		19
(-1.3) 		14
(-2.5) 		11.9
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 18.6
(-0.2)
P 		30.2
(3)
P 		16.3
(-0.8)
P 		13.7
(-1.5)
P 		12.6
(-1.8)
M 		8.3
(-3)
P 		22
B 28.1
(3)
P 		27.2
(2.7)
P 		19.2
(-0)
P 		10.3
(-3)
P 		28
(3)
M 		24.3
(1.7)
P 		18
C 31.6
(3)
P 		28.7
(2)
P 		17.1
(-1.9)
P 		18.3
(-1.5)
P 		14
(-3)
P 		23.6
(0.3)
P 		18
avr 26.1
(1.9) 		28.7
(3) 		17.5
(-1.6) 		14.1
(-3) 		18.2
(-1.3) 		18.7
(-1.1) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179901_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9179
Sequence Type Exemplar sequence
Representative Public ID Y51H4A.1 NCBI
Target Description Y51H4A.1 /REP_DB=WormBase Gene ID /WP=CE22328 /TR=Q9NAE5 /GB=CAB61134.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070557
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000000206 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16474088:16477152:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070557 6/11 Cross Hyb Matching Probes None
SNAP00000000175 2/11 Cross Hyb Matching Probes None
Y51H4A.1 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16474093-16477158(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB61134 Hypothetical protein Y51H4A.1 [Caenorhabditis elegans] ref|NP_502958.2| Y51H4A.1 [Caenorhabditis elegans] 1.0E-81
blast CAE68151 Hypothetical protein CBG13805 [Caenorhabditis briggsae] 3.0E-12
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000000206 1 2-19
Sequence
Target Sequence 
>C. ELEGANS:179901_AT
gaaatggtcatagaacttcacacagaagcagctccagttgaaaattatctggaagaagaa
atacaaataaaagttcccgaagttgaagaagacaccgaaaaaacaccggctgggtcaccg
aaatccacgtcatcatgtatttcttcagagattttatcggaacaatcgattggtacatgt
gcaaaattatactgtttcacaaatcgtccgacactttacgggttccgccacacagcggaa
cccgtttgttgtcgggtgctggcgaggttccaatttcaaaatttcaactgtttcaagttc
tcatcaatatctccccgcccatcatccttccctttggactttgccacgtcatcatactct
gctccattatccaatttcactcgagaaaccccaaatattgtgcctagaatgatgtcagaa
gagtttgaatccttgcataaatgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATGGTCATAGAACTTCACACAG 303 361 214 Antisense
TTCACACAGAAGCAGCTCCAGTTGA 211 683 230 Antisense
TCACCGAAATCCACGTCATCATGTA 81 625 328 Antisense
ACTGTTTCACAAATCGTCCGACACT 421 97 404 Antisense
TTACGGGTTCCGCCACACAGCGGAA 330 681 429 Antisense
CACAGCGGAACCCGTTTGTTGTCGG 541 195 444 Antisense
GTGCTGGCGAGGTTCCAATTTCAAA 225 479 469 Antisense
TTCAACTGTTTCAAGTTCTCATCAA 549 685 496 Antisense
GCTCCATTATCCAATTTCACTCGAG 624 297 574 Antisense
TTCACTCGAGAAACCCCAAATATTG 276 685 589 Antisense
GAGTTTGAATCCTTGCATAAATGCA 653 397 634 Antisense
Sequence Source Affymetrix Proprietary Database