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[179900_s_at]

Description C44B7.5 /REP_DB=WormBase Gene ID /WP=CE02543 /TR=Q18594 /GB=AAA68336.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 10      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 10.7
(-2.1)
A 		15.9
(-1.6)
A 		1.9
(-3)
A 		63.7
(3)
A 		62
B 19.7
(-3)
A 		40.8
(3)
A 		30.7
(0.1)
P 		40.5
(2.9)
A 		21
C 21.1
(-1.7)
A 		7.1
(-3)
A 		17.2
(-2)
A 		70.4
(3)
P 		63
avr 17.2
(-2.9) 		21.3
(-2.3) 		16.6
(-3) 		58.2
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 335
1 2 3 4 5 6 range
A 8.8
(-2.8)
A 		2.4
(-3)
A 		22
(-2.5)
A 		4.9
(-2.9)
A 		225.3
(3)
P 		91
(-0.6)
P 		223
B 26.7
(-2.7)
A 		16.2
(-2.9)
A 		12
(-3)
A 		13.2
(-3)
A 		313.5
(3)
P 		110.7
(-1)
P 		302
C 13.6
(-3)
A 		21.2
(-2.9)
A 		17.8
(-2.9)
A 		22.4
(-2.8)
A 		337.4
(3)
P 		99.7
(-1.4)
P 		324
avr 16.4
(-2.9) 		13.3
(-3) 		17.3
(-2.9) 		13.5
(-3) 		292.1
(3) 		100.5
(-1.1) 		279
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.9
(-0.7)
A 		3.4
(-1)
A 		0.5
(-3)
A 		9.3
(3)
A 		9
B 6.3
(-3)
A 		10.1
(3)
A 		7.1
(-1.7)
P 		8.6
(0.6)
A 		4
C 7
(0)
A 		2
(-3)
A 		6
(-0.6)
A 		11.9
(3)
P 		10
avr 5.7
(-1.7) 		5.2
(-2.2) 		4.5
(-3) 		9.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 1.6
(-2.9)
A 		0.9
(-3)
A 		4.8
(-2.7)
A 		1.2
(-3)
A 		68
(3)
P 		22.1
(-1.1)
P 		67
B 9.3
(-2.7)
A 		5.4
(-2.9)
A 		2.9
(-3)
A 		3.5
(-3)
A 		127.4
(3)
P 		41.3
(-1.1)
P 		125
C 5
(-3)
A 		6.5
(-2.9)
A 		4.5
(-3)
A 		4.5
(-3)
A 		109.2
(3)
P 		33.4
(-1.3)
P 		105
avr 5.3
(-2.9) 		4.3
(-2.9) 		4.1
(-2.9) 		3.1
(-3) 		101.5
(3) 		32.3
(-1.2) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179900_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5216
Sequence Type Exemplar sequence
Representative Public ID C44B7.5 NCBI
Target Description C44B7.5 /REP_DB=WormBase Gene ID /WP=CE02543 /TR=Q18594 /GB=AAA68336.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063003(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063003 NCBI Caenorhabditis elegans C44B7.5 (C44B7.5) mRNA, complete cds. 11/11 None
SNAP00000042319 ENSEMBL cdna:SNAP chromosome:CEL140:II:6871385:6872512:-1 11/11 None
GENEFINDER00000042337 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6871385:6872491:-1 11/11 None
C44B7.5 ENSEMBL cdna:known chromosome:CEL140:II:6871385:6872512:-1 gene:C44B7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6871380-6872508(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C44B7.5
Entrez Gene 174124 Entrez gene
SwissProt Q18594 EMBL-EBI
WormBase CE02543 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6584 catecholamine metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4500 dopamine beta-monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68336 Hypothetical protein C44B7.5 [Caenorhabditis elegans] ref|NP_495404.1| C44B7.5 [Caenorhabditis elegans] 1.0E-119
blast AAA68336 Hypothetical protein C44B7.5 [Caenorhabditis elegans] ref|NP_495404.1| C44B7.5 [Caenorhabditis elegans] 1.0E-115
blast CAE65982 Hypothetical protein CBG11171 [Caenorhabditis briggsae] 4.0E-88
Sequence
Target Sequence 
>C. ELEGANS:179900_S_AT
ttgaccgattgtcttgatgaccacaagtactgtgttggattgccacgtggatgtgttgga
accgagtgcaacttcgcattcagctcaatctctaatggaactcatacggaaatcgagatt
ttcggaaacagcgtaatagacaagacgtggcttgcaattggttactcggctgataaaaag
atggaagatgatttcgttgttttctgtattcgtgatgacgcgggaacaaacatgaataaa
ctcgatcaaatggctggacttgcttacaatggaaaacattccaatgaaatgactggaact
atcgaaaatattaagaagaataagaatgacaagtttggtctcgatttggaaatgaaggaa
tatgagaaggatgagcaaactttgtactgcaagatggcacatcgtgtcgagccaatcatc
gatcgattcaacgtgagcaaagttgaaattttgatggccaaaggaacttggatgaaggga
ggtttgagctatcatggaaatactcgcaacaatacaggaatcatcgacttgtctggggag
agcaagcacaagagaaagaactctgccgttggatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGACCGATTGTCTTGATGACCACA 58 705 94 Antisense
GTACTGTGTTGGATTGCCACGTGGA 6 459 120 Antisense
GTGGATGTGTTGGAACCGAGTGCAA 696 489 140 Antisense
CGAGTGCAACTTCGCATTCAGCTCA 96 251 156 Antisense
GTGGCTTGCAATTGGTTACTCGGCT 285 491 240 Antisense
GATGATTTCGTTGTTTTCTGTATTC 450 409 280 Antisense
TTCTGTATTCGTGATGACGCGGGAA 97 693 295 Antisense
AAATGGCTGGACTTGCTTACAATGG 180 121 341 Antisense
TCGTGTCGAGCCAATCATCGATCGA 17 607 495 Antisense
GGAATCATCGACTTGTCTGGGGAGA 522 533 610 Antisense
GAGAAAGAACTCTGCCGTTGGATCC 143 393 645 Antisense
Sequence Source Affymetrix Proprietary Database